| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,624,187 | G→C | 12.2% | intergenic (‑92/+81) | PP_3194 ← / ← PP_3195 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,624,187 | 0 | G | C | 12.2% | 160.8 / 12.8 | 57 | intergenic (‑92/+81) | PP_3194/PP_3195 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (31/19); new base C (4/3); total (35/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.45e-01 | |||||||||||
CAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCATTGATGC > NC_002947/3624045‑3624332 | cAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGAt > 2:598588/1‑150 (MQ=255) gCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATAcc > 2:1027661/1‑150 (MQ=255) cAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGCCATc < 1:357365/142‑1 (MQ=255) cAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGCCATc > 2:357365/1‑142 (MQ=255) agggCCGTCGAACAGGGTGGAGACGTGAGCATGCAAGCCACTGATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTgg < 2:800698/147‑1 (MQ=255) tCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGctctc > 2:154150/1‑150 (MQ=255) gAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTg > 1:418030/1‑150 (MQ=255) aaCAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTgg < 1:154150/150‑1 (MQ=255) tgcaggtgcaggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACga < 2:764593/146‑1 (MQ=255) tgcaggtgcaggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACga > 1:764593/1‑146 (MQ=255) caggtgcaggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGCCATCGATACCTgg < 1:1033426/123‑1 (MQ=255) caggtgcaggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGCCATCGATACCTgg > 2:1033426/1‑123 (MQ=255) aggtgcaggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGgc < 1:598588/150‑1 (MQ=255) aggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGATGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAAt < 2:58351/150‑1 (MQ=255) ctctctCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAg < 2:418030/150‑1 (MQ=255) ctctcATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAggg > 1:693414/1‑150 (MQ=255) tcATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCg > 2:684860/1‑150 (MQ=255) tcATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCg > 1:965958/1‑150 (MQ=255) cATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGCTCCAGGCTTGATCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCgg > 1:812008/1‑150 (MQ=255) cATATTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGTTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAGCGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCgg < 2:491680/150‑1 (MQ=255) aTCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGc > 2:288745/1‑150 (MQ=255) tCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCa > 1:212953/1‑150 (MQ=255) ttGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCGATCGGCGCCGCCCAAGCCAGGGCCGGCAgc > 1:882331/1‑150 (MQ=255) ggtggtGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCCGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGcgccgc > 1:171720/1‑126 (MQ=255) ggtggtGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGcgccgc < 2:171720/126‑1 (MQ=255) gCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGc > 2:647980/1‑150 (MQ=255) gCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGc > 2:104915/1‑150 (MQ=255) aaGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCg > 2:521749/1‑150 (MQ=255) aggctaggctGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCg‑t < 1:648329/150‑1 (MQ=255) ggctaggctGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCgag > 1:721070/1‑148 (MQ=255) gctaggctGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCg‑tgt > 1:764886/1‑150 (MQ=255) gctaggctGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCg‑tgt < 1:647980/150‑1 (MQ=255) gctaggctGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCACATCCGGAAGGCCTCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCg‑tgt > 2:595216/1‑150 (MQ=255) gctGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGgccg < 2:486580/150‑1 (MQ=255) gCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAgg < 1:104915/150‑1 (MQ=255) gACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCAACTCGCTGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAgggg > 1:968476/1‑149 (MQ=255) gACTGCCCGGCACCAGCAGATGCTATTGATGACCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAAAACTGCGCCAATCTGCGCCGCCCAAGCCAGGGCCGCGAGCG‑CGACACGTCTGATGTGGCCGCCAAGGGt > 1:968112/1‑150 (MQ=255) cccGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCgg > 2:750787/1‑150 (MQ=255) cccGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCgg < 1:684860/150‑1 (MQ=255) gCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCGATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGAt < 2:882331/150‑1 (MQ=255) aCCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATcc > 1:1021439/1‑150 (MQ=255) ccAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAgc < 1:874535/109‑1 (MQ=255) ccAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAgc > 2:874535/1‑109 (MQ=255) cTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATg > 2:542644/1‑150 (MQ=255) ttGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAg > 2:445217/1‑150 (MQ=255) cgCCAGGTATCGATGCCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTgg > 1:80884/2‑109 (MQ=255) cgCCAGGTATCGATGCCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTgg < 2:80884/108‑1 (MQ=255) ccAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCgg > 2:1136828/1‑150 (MQ=255) cAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGgccgc < 1:684020/110‑1 (MQ=255) cAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGgccgc > 2:684020/1‑110 (MQ=255) gTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCAtt > 2:669156/1‑150 (MQ=255) gTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCAtt < 1:288745/150‑1 (MQ=255) gTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTAGAGGCGATCCAGGCGTCGATGTAGTGCCCGGCAtt > 2:917654/1‑150 (MQ=255) gTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCA‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCAtt > 2:823623/1‑150 (MQ=255) tCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCATTGAt < 2:764886/150‑1 (MQ=255) cGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCATTGATg < 2:812008/150‑1 (MQ=255) gATGGCATCGATACGTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCAAAGCCAGGGCCGGCAGAGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGACCGGCATTGATGc > 1:508424/1‑150 (MQ=255) | CAGGCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCG‑TGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCATTGATGC > NC_002947/3624045‑3624332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |