| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,641,745 | G→C | 6.7% | P26A (CCG→GCG) | PP_3208 ← | Pdr/VanB family oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,641,745 | 0 | G | C | 6.7% | 185.2 / 5.0 | 60 | P26A (CCG→GCG) | PP_3208 | Pdr/VanB family oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base G (28/28); new base C (2/2); total (30/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.03e-01 | |||||||||||
GGAGGCTTTTTCGCGCTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGG > NC_002947/3641599‑3641889 | ggAGGCTTTTTCGCGCTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCcggcgg < 2:1055606/150‑1 (MQ=255) cTTTTTCGCGCTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCa > 2:780857/1‑150 (MQ=255) cgcgCTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCca < 2:738006/150‑1 (MQ=255) gcgcTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCggg < 2:285500/139‑1 (MQ=255) gcgcTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCggg < 2:285139/139‑1 (MQ=255) gcgcTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCggg > 1:285500/1‑139 (MQ=255) gcgcTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCggg > 1:285139/1‑139 (MQ=255) gcgcTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCcac > 2:63482/1‑150 (MQ=255) gcTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCacac > 1:962125/1‑150 (MQ=255) cccAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCAcg > 1:259762/1‑150 (MQ=255) ccAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCAcgt > 2:204478/1‑150 (MQ=255) gTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACgtcgtc < 2:1122128/150‑1 (MQ=255) gTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACgtcgtc < 1:34156/150‑1 (MQ=255) aTGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTc > 1:1019107/1‑150 (MQ=255) aTGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTc > 1:302279/1‑150 (MQ=255) gACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCaa < 1:229756/150‑1 (MQ=255) cTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAg < 1:1160210/150‑1 (MQ=255) cTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAg > 2:1160210/1‑150 (MQ=255) gggCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGc > 1:1071202/1‑150 (MQ=255) gCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCAc > 1:243574/1‑150 (MQ=255) cTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACgtcgtc > 1:419196/1‑125 (MQ=255) cTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACgtcgtc < 2:419196/125‑1 (MQ=255) tGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAgg > 2:109009/1‑133 (MQ=255) tGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAgg < 1:109009/133‑1 (MQ=255) aGTATTGGCGTACCGCGCGATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCg < 2:108455/150‑1 (MQ=255) gCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCt > 1:42750/1‑150 (MQ=255) ccGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATgc < 2:209998/150‑1 (MQ=255) cgcgCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATgcg > 2:579480/1‑150 (MQ=255) gcgcCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATgcgc > 2:557699/1‑150 (MQ=255) aTTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCca < 1:1076654/80‑1 (MQ=255) aTTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCca > 2:1076654/1‑80 (MQ=255) aTTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGccc < 1:230330/116‑1 (MQ=255) aTTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGccc > 2:230330/1‑116 (MQ=255) ccAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTc < 2:366705/128‑1 (MQ=255) ccAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTc > 1:366705/1‑128 (MQ=255) cAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCcgcg > 2:707085/1‑150 (MQ=255) cAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCcgcg > 2:774302/1‑150 (MQ=255) aGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGCGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGtt < 1:63482/150‑1 (MQ=255) gTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCggg > 1:1201847/1‑55 (MQ=255) gTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCggg < 2:1201847/55‑1 (MQ=255) tCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCa > 2:111496/1‑109 (MQ=255) tCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCa < 1:111496/109‑1 (MQ=255) acaTGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGc < 2:1071202/150‑1 (MQ=255) acaTGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGc < 1:774302/150‑1 (MQ=255) gCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTa > 2:1131934/1‑150 (MQ=255) aCCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACa < 2:243574/150‑1 (MQ=255) cGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGc < 1:707085/150‑1 (MQ=255) gCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGc < 1:423525/150‑1 (MQ=255) gTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCTTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGcc < 1:579480/150‑1 (MQ=255) gAAGGGCAGGGGAGCAGGCCCCGGCGGGGCGAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCCACTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGACGTACAGCCTGGCGTGCCTgg < 2:339408/150‑1 (MQ=255) gAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTgg < 2:1019107/150‑1 (MQ=255) gCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGcc > 1:395264/1‑150 (MQ=255) gaactggCCCCGCCGGGGCCTGCTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACa < 2:365572/119‑1 (MQ=255) gaactggCCCCGCCGGGGCCTGCTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACa > 1:365572/6‑124 (MQ=255) ctggCCCCGCCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGc > 1:1078175/3‑150 (MQ=255) ctggCCCCGCCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGc < 2:1078175/148‑1 (MQ=255) cAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGc < 1:1131934/150‑1 (MQ=255) ccccGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAgg > 2:726227/1‑150 (MQ=255) ccccGGCGGGGCCAGTGCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGCCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCCAACTGCCCAGTGCGGCAAgg < 2:50499/150‑1 (MQ=255) cccGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGc < 1:242392/76‑1 (MQ=255) cccGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGc > 2:242392/1‑76 (MQ=255) | GGAGGCTTTTTCGCGCTTGATGCCCAGGTATACATGACCGTCCTCGGGCAGGCTGACCACTGAGTATTGGCGTACCGCGCCATTGCCCAGGCGCAGGTCCACATGAGCACCGGGTGCCCAGTCGAAGGGCAGGGGAGCAGGCCCCGGCGGGGCCAGTTCCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGG > NC_002947/3641599‑3641889 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |