Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,196,194 | G→C | 10.5% | A147P (GCC→CCC) | PP_5618 → | Cro/CI family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,196,194 | 0 | G | C | 10.5% | 170.1 / 10.5 | 57 | A147P (GCC→CCC) | PP_5618 | Cro/CI family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (26/25); new base C (2/4); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 |
CGGCAGCTTGAACTGGGAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTATGGGCCCGGCTGTCGTGAACCGAGCCGTCGACGGTG > NC_002947/4196050‑4196339 | cGGCAGCTTGAACTGGGAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTgg < 1:1070272/150‑1 (MQ=255) ttGAACTGGGAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAggg > 1:818618/1‑138 (MQ=255) ttGAACTGGGAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAggg < 2:818618/138‑1 (MQ=255) ttGAACTGGGAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGt > 2:1053127/1‑150 (MQ=255) ttGAACTGGGAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTCACCAGGCCCTGGCAACGGt < 2:608216/150‑1 (MQ=255) tGGGAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCa > 2:736674/1‑150 (MQ=255) gggAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCAc < 1:1102979/150‑1 (MQ=255) gggAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTCACCAGGCCCTGGCAACGGTagacttt < 2:1133373/150‑7 (MQ=255) aCAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAGGCCACTGCTCg > 2:290190/1‑150 (MQ=255) aGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCt > 1:419631/1‑150 (MQ=255) cAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTc < 2:712563/150‑1 (MQ=255) cAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTc < 2:286723/150‑1 (MQ=255) cAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTc > 1:712563/1‑150 (MQ=255) gCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCCAACTGTTTCGTTGCCATTGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCga < 1:1053127/150‑1 (MQ=255) tGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGt > 2:1186207/1‑113 (MQ=255) tGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGt < 1:1186207/113‑1 (MQ=255) aGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAggg > 1:633464/1‑150 (MQ=255) ggaggaTCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTc < 1:972582/125‑1 (MQ=255) ggaggaTCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTc > 2:972582/1‑125 (MQ=255) ggaTCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATg < 2:663983/150‑1 (MQ=255) gaTCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTCACCAGGCCCTggcaacg < 2:365436/107‑6 (MQ=255) gaTCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTCACCAGGCCCTggcaacg > 1:365436/1‑102 (MQ=255) tCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGcc < 1:546162/150‑1 (MQ=255) aaaaGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGa > 1:443526/1‑150 (MQ=255) gCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTc < 2:419631/150‑1 (MQ=255) cttCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCa > 2:15832/2‑150 (MQ=255) ttCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCAt < 1:86424/150‑1 (MQ=255) aaGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATgag < 2:332694/150‑1 (MQ=255) aGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTAc > 2:684611/1‑114 (MQ=255) aGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTAc < 1:684611/114‑1 (MQ=255) aGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTCACCAGGCCCTGGCAACGGTa > 2:97650/1‑90 (MQ=38) aGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTCACCAGGCCCTGGCAACGGTa < 1:97650/90‑1 (MQ=37) aTGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTAcgc > 1:365237/1‑113 (MQ=255) aTGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTAcgc < 2:365237/113‑1 (MQ=255) ccgatctcTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTCATCGCCCGACAAGCTCGCATGAGATCGc < 1:1068436/143‑1 (MQ=255) gCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGcc > 2:428875/1‑150 (MQ=255) tAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTAGCTTCTTCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGccagatcgg > 2:1068436/1‑143 (MQ=255) ccTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGc < 1:512375/150‑1 (MQ=255) aCCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAg < 1:736674/150‑1 (MQ=255) aCCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAg > 1:896221/1‑150 (MQ=255) aCCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAg > 2:905884/1‑150 (MQ=255) aCCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAg < 1:905884/150‑1 (MQ=255) agagaCAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGt > 1:672806/1‑150 (MQ=255) aCAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGccc > 2:687323/1‑150 (MQ=255) aGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAgg > 2:293315/1‑137 (MQ=255) aGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAgg < 1:293315/137‑1 (MQ=255) gCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTAt < 1:15832/150‑1 (MQ=255) ccGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTa > 1:1170232/1‑75 (MQ=255) ccGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTa < 2:1170232/75‑1 (MQ=255) cGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATga > 1:842373/1‑109 (MQ=255) cGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATga < 2:842373/109‑1 (MQ=255) gcTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTATGGGCCCGGCTGTCg > 2:450426/1‑150 (MQ=255) cTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTATGGGCCCGGCTGTCGt < 2:494620/150‑1 (MQ=255) tCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTATGGGCCCGGCTGTCGTGAACCGAGc > 1:216841/1‑150 (MQ=255) tACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTATGGGCCCGGCTGTCGTGAACCGAGCCg > 1:668604/1‑150 (MQ=255) gTTGCCAGGGCCTGGTGACGGTAGGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTATGGGCCCGGCTGTCGTGAACCGAGCCGTCGa < 1:290190/150‑1 (MQ=255) ccAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGTGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGc > 1:41048/1‑107 (MQ=255) ccAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGTGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGc < 2:41048/107‑1 (MQ=255) cAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTATGGGCCCGGCTGTCGTGAACCGAGCCGTCGACGgtg > 1:772575/1‑150 (MQ=255) | CGGCAGCTTGAACTGGGAGGACAGCAAGCCCGACACGCTGCCAGGGAGGATCGAAAAGCTGCCATTCAAGCATGCAAGGCTAGGGGCCTCACCCAGCGAGAGACAGCCGCTGAGCTAGCGCTGTCAAAGTCTACCGTTGCCAGGGCCTGGTGACGGTAAGCCACTGCTCGCTTCTGCTCTACGCGAGGAGGGTAATGGCCCGACAAGCTCGCATGAGATCGCCTAGCAGATCTTGCTAAGGACTGCGTGCCCTATGGGCCCGGCTGTCGTGAACCGAGCCGTCGACGGTG > NC_002947/4196050‑4196339 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |