Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,278,932 | C→G | 9.4% | L30V (CTG→GTG) | PP_3750 → | GntR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,278,932 | 0 | C | G | 9.4% | 159.6 / 7.7 | 53 | L30V (CTG→GTG) | PP_3750 | GntR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (24/24); new base G (3/2); total (27/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.25e-01 |
CTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAGCGGCGTGGTCGGCCGTGGCACATTCGT > NC_002947/4278792‑4279071 | cTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGccgccg > 2:1186496/1‑150 (MQ=255) tcactCGCAGCCAATCCTCTATCCTGAGCAATCCTCCCCTCCGCACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGAAAAGACCTGGACTATCAGCTTTACATGTAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCAgg < 2:42068/146‑1 (MQ=255) tGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCgg > 2:811578/1‑150 (MQ=255) gAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGc > 1:575899/1‑150 (MQ=255) gCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCa > 1:925717/1‑150 (MQ=255) cAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCaa > 2:975738/1‑150 (MQ=255) aaTCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTgcc > 1:555732/1‑150 (MQ=255) gCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTa < 2:925717/150‑1 (MQ=255) cTGAGCAATCCTCCGCTCCGGACACGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTc > 2:198674/1‑150 (MQ=255) tGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCAGGTGgccgctgt > 1:644322/1‑123 (MQ=255) tGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCAGGTGgccgctgt < 2:644322/126‑4 (MQ=255) aTCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTgctggc < 2:575899/150‑1 (MQ=255) tcctccGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCAGGTGgccgctgtcga < 1:282575/122‑7 (MQ=255) tcctccGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCAGGTGgccgctgtcga > 2:282575/1‑116 (MQ=255) tcctccGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTgctggct > 2:276041/1‑150 (MQ=255) tcctccGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTgctggct > 1:419828/1‑150 (MQ=255) tcctccGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTgctgg > 2:266338/1‑148 (MQ=255) tcctccGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTgctgg < 1:266338/148‑1 (MQ=255) tccgctccgGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGTGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGaa > 1:894432/1‑150 (MQ=255) tccgctccgGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGaa < 1:276041/150‑1 (MQ=255) gctccgGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGaacaa > 2:474903/1‑150 (MQ=255) cgGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTgg < 1:905058/150‑1 (MQ=255) cgGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTgg < 2:1011101/150‑1 (MQ=255) ggACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCCCGGGCTCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTggg < 1:811578/150‑1 (MQ=255) gCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTctgctg > 1:976198/1‑130 (MQ=255) gCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTctgctg < 2:976198/130‑1 (MQ=255) gCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATc > 2:151288/1‑150 (MQ=255) cccATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATcg < 2:555732/150‑1 (MQ=255) aTGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCATACCCGTCTGCTGGCTGAACAACTGGGCGTATCgcgc < 1:975738/150‑1 (MQ=255) ggAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTgg < 1:977709/89‑1 (MQ=255) ggAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTgg > 2:977709/1‑89 (MQ=255) aaCTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCCCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGa < 1:752849/150‑1 (MQ=255) tGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCg < 1:629514/150‑1 (MQ=255) tGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCg > 1:1158225/1‑150 (MQ=255) gCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGaac > 1:1159614/1‑125 (MQ=255) gCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGaac < 2:1159614/125‑1 (MQ=255) acaTTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGTGCGATGGTATCGACAGCGGCCAACTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTgg > 1:811198/1‑150 (MQ=255) aTTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGcc > 1:939837/1‑150 (MQ=255) cGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGTGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAg < 2:811198/150‑1 (MQ=255) cAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTgg > 1:488186/1‑110 (MQ=255) cAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTgg < 2:488186/110‑1 (MQ=255) aaGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGa < 2:1158225/150‑1 (MQ=255) aaGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGa < 2:229743/150‑1 (MQ=255) cGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGAGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATaa < 1:198674/150‑1 (MQ=255) gATCAGCTTTACCAGCAATTGCTCGATGGTCTCGAACGCGGCCACCTGGCGGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTCAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATGAc < 2:83823/150‑1 (MQ=255) aTCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAAcc < 2:939837/150‑1 (MQ=255) tCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTgg < 2:1099720/95‑1 (MQ=255) tCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTgg > 1:1099720/1‑95 (MQ=255) cTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTc > 2:373987/1‑150 (MQ=255) tACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAgc > 1:212209/1‑150 (MQ=255) tCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAGCGGCGTGGTCGGCCGTGGCACAt > 1:150757/1‑150 (MQ=255) agccggCGGCCAGGTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAGCGGCGTGGTCGGCCGTGGCACAtt > 1:82898/6‑150 (MQ=255) cAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAGCGGCGTGGTCGGCCGTGGCACAGTCGt < 1:1186496/150‑1 (MQ=255) | CTGAGTCGCAGCCAATCCGCTATCCTGAGCAATCCTCCGCTCCGGACCCGCCCATGGAACTGCACATTCGCCTGGAGGGCCGCAAAGGCCTGGCCGATCAGCTTTACCAGCAATTGCGCGATGGTATCGACAGCGGCCACCTGGCCGCCGGCTCCCAACTGCCGCCTACCCGTCTGCTGGCTGAACAACTGGGCGTATCGCGCAAGACCGTGGCCGAGGCCTATTCGCGGCTGACCTACGATAACCTGCTCAGCGGCGTGGTCGGCCGTGGCACATTCGT > NC_002947/4278792‑4279071 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |