Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,823,386 | C→G | 9.1% | G2617R (GGC→CGC) ‡ | pvdL ← | non‑ribosomal peptide synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,823,386 | 0 | C | G | 9.1% | 172.1 / 8.4 | 55 | G2617R (GGC→CGC) ‡ | pvdL | non‑ribosomal peptide synthetase |
Reads supporting (aligned to +/- strand): ref base C (25/25); new base G (2/3); total (27/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.92e-01 |
AGCAGCACCAGATGCGCAGGCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTCCACCAGGCCATCGGTAC > NC_002947/4823244‑4823532 | agcagcACCAGATGCGCAGGCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCACTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGGGCGGCAAg < 2:100988/150‑1 (MQ=255) agcaCCAGATGCGCAGGCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTcc > 2:867336/1‑150 (MQ=255) caCCAGATGCGCAGGCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAg > 1:481268/1‑150 (MQ=255) caCCAGATGCACAGGCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAg < 2:292903/150‑1 (MQ=255) gcAGGCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCacg > 2:702725/1‑150 (MQ=255) aGGCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCacgac > 1:767221/1‑150 (MQ=255) ggCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCacgacg < 1:158475/150‑1 (MQ=255) cACCATGTAGTCGGGCAGGTGCTTGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGc < 2:327811/150‑1 (MQ=255) cACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACGGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGc < 1:559862/150‑1 (MQ=255) aCCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGcc > 2:1042408/1‑150 (MQ=255) tAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCtcgtcg > 1:1066474/1‑150 (MQ=255) tCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGGGCGGCAAgca < 2:715170/122‑3 (MQ=255) tCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGGGCGGCAAgca > 1:715170/1‑120 (MQ=255) gggCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATc > 1:7637/1‑150 (MQ=255) ggTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGt < 2:879485/150‑1 (MQ=255) gTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTg < 1:581714/150‑1 (MQ=255) tGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTgc < 2:1066474/150‑1 (MQ=255) gCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAg > 1:5551/1‑150 (MQ=255) gCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAg > 1:987746/1‑150 (MQ=255) aTCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGGGCGGCaatcag > 1:1197717/1‑99 (MQ=255) aTCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGGGCGGCAAgcag < 2:1197717/103‑4 (MQ=255) tttCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCtctc < 2:1169026/150‑1 (MQ=255) tCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGa < 2:481268/150‑1 (MQ=255) cTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGc > 1:179383/1‑150 (MQ=255) cTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGc > 1:480605/1‑150 (MQ=255) cagcagTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCCGTTc > 2:134488/1‑150 (MQ=255) cagTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTc < 1:541286/138‑1 (MQ=255) cagTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTc > 2:541286/1‑138 (MQ=255) tgCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAg < 1:702725/150‑1 (MQ=255) gCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGc > 1:1201281/1‑150 (MQ=255) aCGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCcg > 2:227801/1‑150 (MQ=255) tcgtTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCgg < 2:1150522/150‑1 (MQ=255) tACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCt < 1:689860/150‑1 (MQ=255) gTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGTGAGCTTGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACctgc < 2:767221/150‑1 (MQ=255) ggCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACctgctg < 1:562003/150‑1 (MQ=255) cctgcctgCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGt > 1:618465/1‑150 (MQ=255) ctgcctgcACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGAt > 1:754247/1‑120 (MQ=255) ctgcctgcACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGAt < 2:754247/120‑1 (MQ=255) ctgcctgcACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTc < 2:5551/150‑1 (MQ=255) ctgcctgcACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTc > 1:352200/1‑150 (MQ=255) tgcctgcACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCg > 1:500796/1‑150 (MQ=255) tgcACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCa > 1:98998/1‑135 (MQ=255) tgcACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCa < 2:98998/135‑1 (MQ=255) tgcACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATGTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCAc > 1:378896/1‑150 (MQ=255) cacaCCGGAAAGCCTACCAGCTGCGTGCCGCCCGGCAAGGCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCACGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACgg < 2:273665/150‑1 (MQ=255) cAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGAc < 2:7637/150‑1 (MQ=255) aTAGCCCACCATCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATa < 2:513840/150‑1 (MQ=255) cccACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAACACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTcc > 1:675122/1‑150 (MQ=255) caccaGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTc > 2:254871/1‑147 (MQ=255) caccaGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTc < 1:254871/147‑1 (MQ=255) ccaGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTccacca < 1:1042408/150‑1 (MQ=255) caGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTCCACCAg < 2:500796/150‑1 (MQ=255) ctgctTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTCCACCAGGcc > 1:1030212/1‑150 (MQ=255) tgctTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTCCACCAGGCCa < 1:227801/150‑1 (MQ=255) ctTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACCCCTTAGTCGGCAAACAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTCCACCAGGCCATc > 2:296470/1‑150 (MQ=38) cgccCGGCAAGTCCAGCGCCAGCACGATGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTCCACCAGGCCATCGGTAc > 2:518250/1‑150 (MQ=255) cgccCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTCCACCAGGCCATCGGTAc > 2:208727/1‑150 (MQ=255) | AGCAGCACCAGATGCGCAGGCACCATGTAGTCGGGCAGGTGCTGGCGGGCATCGGCTTTCACCGCTTCGCGCAGCAGTTGTTGCACGTCGTTACCGGCGGTGGCCTGCCTGCACACCAGATAGCCCACCAGCTGCTTGCCGCCCGGCAAGTCCAGCGCCAGCACGACGGCCTCGTCGACATCCTCGTGCGCTAGCAGGCGGCTCTCGATTTCGCCCAGTTCGATGCGGAAGCCGCGGATCTTCACCTGCTGGTCGGCACGGCCGACATACTCCACCAGGCCATCGGTAC > NC_002947/4823244‑4823532 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |