Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,967,691 A→C 6.0% S11A (TCC→GCC)  fliD ← flagellar filament capping protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,967,6910AC 6.0% 192.7 / 4.5 67S11A (TCC→GCC) fliDflagellar filament capping protein
Reads supporting (aligned to +/- strand):  ref base A (28/35);  new base C (2/2);  total (30/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.16e-01

GGAAGGTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAACC  >  NC_002947/4967547‑4967831
                                                                                                                                                |                                                                                                                                            
ggAAGGTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGa                                                                                                                                         >  2:673298/1‑150 (MQ=255)
ggAACGTATCCTATGTATGCTTAATCATGCCCAGCGCTGACACTTGTGTCGGCTTAGCCTTCTGTTGGCTAGTGATGCGCTGTTTCTTGGGCGCCTTTTCGGCATCGGCCAGGGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGa                                                                                                                                         <  2:514110/150‑1 (MQ=255)
  aaGGTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATa                                                                                                                                       <  1:1158838/150‑1 (MQ=255)
     gTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCa                                                                                                                                    >  2:462523/1‑150 (MQ=255)
          cAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCactgac                                                                                                                               >  1:414572/1‑150 (MQ=255)
          cAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTACTGTTCCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATAGACTGGGTATCTACGCCGGAGCCCATACCactgac                                                                                                                               >  2:127795/1‑150 (MQ=255)
              gCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACtgtt                                                                                                                           <  1:219137/150‑1 (MQ=255)
               cATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACtgttg                                                                                                                          <  2:1009859/150‑1 (MQ=255)
                 ttCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTa                                                                                                                        <  1:456093/150‑1 (MQ=255)
                 ttCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTa                                                                                                                        >  2:127265/1‑150 (MQ=255)
                    ttAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACtt                                                                                                                     <  1:673298/150‑1 (MQ=255)
                    ttAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACtt                                                                                                                     >  2:1032571/1‑150 (MQ=255)
                    ttAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACtt                                                                                                                     >  2:226779/1‑150 (MQ=255)
                    ttAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACtt                                                                                                                     <  2:1194533/150‑1 (MQ=255)
                                 cagcagACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTtat                                                                                                        >  1:697128/1‑150 (MQ=255)
                                    cagACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATc                                                                                                     >  1:798878/1‑150 (MQ=255)
                                      gACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACGGACTGTTGTACTTGCCATTGCTTTATATccc                                                                                                   <  1:741203/150‑1 (MQ=255)
                                       acacTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCt                                                                                                  <  1:227729/150‑1 (MQ=255)
                                         acTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGa                                                                                                >  1:778625/1‑150 (MQ=255)
                                         acTTGTGTGGTCGTAGTCTCCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGa                                                                                                >  2:221587/1‑150 (MQ=255)
                                            tgtgtgGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCa                                                                                             <  1:221587/150‑1 (MQ=255)
                                              tgtgGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGc                                                                                           <  1:127265/150‑1 (MQ=255)
                                               gtgGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCg                                                                                          <  1:1032571/150‑1 (MQ=255)
                                                  gTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAAt                                                                                       <  1:1449/150‑1 (MQ=255)
                                                  gTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAAt                                                                                       >  2:464885/1‑150 (MQ=255)
                                                    cGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGc                                                                                     <  2:798878/150‑1 (MQ=255)
                                                       aGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGGCTCCGGCGTCGATAccca                                                                                                                                   <  1:636735/101‑3 (MQ=38)
                                                       aGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGGCTCCGGCGTCGATAccca                                                                                                                                   >  2:636735/1‑99 (MQ=38)
                                                         tcttctGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGa                                                                                                                                              <  2:962228/88‑1 (MQ=255)
                                                         tcttctGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGa                                                                                                                                              >  1:962228/1‑88 (MQ=255)
                                                           ttctGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGc                                                                              >  1:321155/1‑150 (MQ=255)
                                                            tctGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCt                                                                             <  1:462523/150‑1 (MQ=255)
                                                             ctGTTGAGTAGGGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCGAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCtt                                                                            <  1:127795/150‑1 (MQ=255)
                                                                    gtagtGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGa                                                                          >  1:108275/1‑145 (MQ=255)
                                                                    gtagtGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGa                                                                          <  2:108275/145‑1 (MQ=255)
                                                                       gtGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGatgaat                                                                  <  2:778625/150‑1 (MQ=255)
                                                                              gctgTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCgag                                                           <  1:464885/150‑1 (MQ=255)
                                                                               ctgTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCgaga                                                          <  2:25104/150‑1 (MQ=255)
                                                                                tgTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGac                                                         >  2:1202304/1‑150 (MQ=255)
                                                                                           cgcCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTTCTTGTCGTTGCGTGATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGt                                              >  2:1002238/1‑150 (MQ=255)
                                                                                               ttttCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAg                                          >  1:364650/1‑150 (MQ=255)
                                                                                                    ggCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCaa                                           <  1:702537/144‑1 (MQ=255)
                                                                                                    ggCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCaa                                           >  2:702537/1‑144 (MQ=255)
                                                                                                      cATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGc                                                                                                             >  1:326825/1‑76 (MQ=255)
                                                                                                      cATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGc                                                                                                             <  2:326825/76‑1 (MQ=255)
                                                                                                      cATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATg                                   <  1:1202304/150‑1 (MQ=255)
                                                                                                      cATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATg                                   <  2:364650/150‑1 (MQ=255)
                                                                                                        tCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTTCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGAAGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGcc                                 >  2:663066/1‑150 (MQ=255)
                                                                                                           gCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCaa                                                                                  >  2:818649/1‑98 (MQ=255)
                                                                                                           gCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCaa                                                                                  <  1:818649/98‑1 (MQ=255)
                                                                                                              agagCCTTGACAATCGACTGGGTATCGACGCCGGAGACCCAACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACAtt                           <  1:918558/150‑1 (MQ=255)
                                                                                                               gagCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGc                                                                                     <  2:870742/91‑1 (MQ=255)
                                                                                                               gagCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGc                                                                                     >  1:870742/1‑91 (MQ=255)
                                                                                                                  ccTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACaa                                                     >  1:1023559/1‑120 (MQ=255)
                                                                                                                  ccTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACaa                                                     <  2:1023559/120‑1 (MQ=255)
                                                                                                                    ttGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACAt                            <  2:126876/143‑1 (MQ=255)
                                                                                                                    ttGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACAt                            >  1:126876/1‑143 (MQ=255)
                                                                                                                        cAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGtc                 <  1:226779/150‑1 (MQ=255)
                                                                                                                             tcagtggTATCGGCTCCGGCGTCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCaa                               >  1:1134020/6‑131 (MQ=255)
                                                                                                                             tcagtggTATCGGCTCCGGCGTCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCaa                               <  2:1134020/126‑1 (MQ=255)
                                                                                                                                  ggTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGc                                                              >  2:305051/1‑95 (MQ=255)
                                                                                                                                  ggTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGc                                                              <  1:305051/95‑1 (MQ=255)
                                                                                                                                       cGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAAcc  <  2:321155/150‑1 (MQ=255)
                                                                                                                                              ggAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGAc                                        <  1:762516/105‑1 (MQ=255)
                                                                                                                                              ggAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGAc                                        >  2:762516/1‑105 (MQ=255)
                                                                                                                                              ggAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGAc                                        >  2:762548/1‑105 (MQ=255)
                                                                                                                                              ggAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGAc                                        <  1:762548/105‑1 (MQ=255)
                                                                                                                                               gAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGtca                >  1:873884/1‑128 (MQ=255)
                                                                                                                                               gAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGtca                <  2:873884/128‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                            
GGAAGGTATCCAATGCATTCTTAATCATGCCCACAGCAGACACTTGTGTGGTCGTAGTCTTCTGTTGAGTAGTGATCTGCTGTTGCTTGGGCGCCTTTTCGGCATCGGCCAGAGCCTTGACAATCGACTGGGTATCGACGCCGGAGCCGATACCACTGACTGTTGTACTTGCCATTGCTTTATATCCCTGATCAGCGAATGCCAATTGCTTGACGATGAATGAGCGAGACACAATCCGAGTCAAGACTCATGCCAACATTACACATTGTCATCAAGTAAAAAACC  >  NC_002947/4967547‑4967831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: