Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,364,611 | A→T | 11.8% | V24D (GTC→GAC) | folP ← | dihydropteroate synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,364,611 | 0 | A | T | 11.8% | 145.1 / 11.3 | 51 | V24D (GTC→GAC) | folP | dihydropteroate synthase |
Reads supporting (aligned to +/- strand): ref base A (20/25); new base T (4/2); total (24/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.02e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.93e-01 |
GCGCACCCGGGCGCGTGGACTCGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGACGCTCATCCTGGGCCGCAGGCGTGCCCGAG > NC_002947/5364462‑5364759 | gcgcACCCGGGCGCGTGGACTCGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGa < 1:1120745/150‑1 (MQ=255) cccGGGCGCGTGGACTCGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATgg < 1:986511/150‑1 (MQ=255) cGGGCGCGTGGACTCGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGTCATGGGt > 2:75880/1‑150 (MQ=255) cgTGGACTCGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGTCATGGGTAttctc < 1:75880/150‑5 (MQ=255) gTGGACTCGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGTCATGGGTAttctca > 1:464295/1‑145 (MQ=255) ggACTCGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACaa > 1:29577/1‑150 (MQ=255) cGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGCGAATACCCATGACATGGGTATGCGACAAATCaa < 1:803359/150‑1 (MQ=255) cGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCaa < 1:545184/150‑1 (MQ=255) gCCACAGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGCGACATTGATAATACCCATGACATGGCTATGCGACAAACCaaa > 2:1202490/1‑149 (MQ=255) aCCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAAc > 2:978779/1‑150 (MQ=255) atatCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCgg < 2:1205567/150‑1 (MQ=255) atatCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCgg > 2:149966/1‑150 (MQ=255) aTCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCg > 2:881099/1‑150 (MQ=255) aaCGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCAACAAATCAGTAACCCGGCTGCCGCaa > 2:69840/1‑150 (MQ=255) ccGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCgg < 1:881099/150‑1 (MQ=255) ggcAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCgggtagg < 1:729163/150‑1 (MQ=255) ggcAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCgggtagg > 2:729163/1‑150 (MQ=255) cATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACAt < 2:270938/95‑1 (MQ=255) cATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTg < 1:923076/150‑1 (MQ=255) cATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTg < 2:29577/150‑1 (MQ=255) cATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATAGTGAGAATACCCATGACAt > 1:270938/1‑95 (MQ=255) gCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACt < 2:228781/150‑1 (MQ=255) ttCGGCGTGCCGCAGGGCCTCGCCGCGCTGACTGAAGCGACCGCCATTGGATAAGCAATCGGGGGTGATATGGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACTCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGa < 1:183175/150‑1 (MQ=255) tgcGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGa > 1:578096/3‑150 (MQ=255) gcgcAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGa < 1:1185317/150‑1 (MQ=255) aGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGcc < 1:149966/150‑1 (MQ=255) gggCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGccc < 1:252740/150‑1 (MQ=255) ccTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCa < 1:1107745/89‑1 (MQ=255) ccTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCa > 2:1107745/1‑89 (MQ=255) tcgCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGtt < 1:68272/150‑1 (MQ=255) gactgaAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGc < 1:1067013/150‑1 (MQ=255) cGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGAt < 1:686650/150‑1 (MQ=255) cGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGAt > 2:393996/1‑150 (MQ=255) tCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTgg < 2:1150836/148‑1 (MQ=255) tCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACAGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTgg > 1:1150836/1‑148 (MQ=255) gagaAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCAc < 1:1116590/98‑1 (MQ=255) gagaAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCAc > 2:1116590/1‑98 (MQ=255) ggAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGa > 1:50243/1‑150 (MQ=255) gAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGAc > 2:852077/1‑150 (MQ=255) aTCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGACGc < 1:393996/150‑1 (MQ=255) gggTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGACGCTCATc < 2:578096/150‑1 (MQ=255) atTGAGAATACCCATGACATGGGTATGCGACAAATCaa > 2:1157037/1‑38 (MQ=255) atTGAGAATACCCATGACATGGGTATGCGACAAATCaa < 1:1157037/38‑1 (MQ=255) ttGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGACGCTCATCCTGGGCCg > 1:1101249/1‑150 (MQ=255) tcgcaTACCCATGTCATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTgg > 1:1018560/5‑122 (MQ=255) tcgcaTACCCATGTCATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTgg < 2:1018560/118‑1 (MQ=255) gcaTACCCATGTCATGGGTATGCGACAAAGCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTCGTGTTCAGCCGCTGGGCGGCCGATTGGCGATTCCGGACGCTAATCCTGGGCCGCAgg > 1:324110/3‑150 (MQ=255) ccATGACAGGGGGATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGACGCTCATCCTGGGCCGCAGGCGTGcc > 2:599403/1‑150 (MQ=255) cATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAg < 1:343704/87‑1 (MQ=255) cATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAg > 2:343704/1‑87 (MQ=255) tGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGACGCTCATCCTGGGCCGCAGGCGTGCCCGa < 1:1185772/150‑1 (MQ=255) gACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGACGCTCATCCTGGGCCGCAGGCGTGCCCGAg > 2:705304/1‑150 (MQ=255) | GCGCACCCGGGCGCGTGGACTCGCCACCGATATCGATCAACGTTGCGCCGGCGGCAACCATCGCTTCGGCGTGGCGCAGGGCCTCGTCGCGCTGACTGAAGCGACCGCCATCGGAGAAGGAATCGGGGGTGATATTGAGAATACCCATGACATGGGTATGCGACAAATCAAGAACCCGGCTGCCGCAAGGCAACCGGGTAGGGTACTGCACTGAGCTCATAGATGCCCTTAGTGTTCAGCCGCTGGGCCGCCGATTGGCGATTCCGGACGCTCATCCTGGGCCGCAGGCGTGCCCGAG > NC_002947/5364462‑5364759 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |