Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,427,024 | A→G | 7.3% | I376T (ATC→ACC) | rhlE‑I ← | ATP‑dependent RNA helicase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,427,024 | 0 | A | G | 7.3% | 156.9 / 2.8 | 55 | I376T (ATC→ACC) | rhlE‑I | ATP‑dependent RNA helicase |
Reads supporting (aligned to +/- strand): ref base A (22/29); new base G (2/2); total (24/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.94e-01 |
TCACCGCCGGTTCCGCACTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTGCCCGCCCGCCCGGTACGCCCGATGCGGTGCACGTAGT > NC_002947/5426875‑5427171 | tCACCGCCGGTTCCGCACTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGa > 1:1171364/1‑150 (MQ=255) cACCGCCGGTTCCGCACTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGAt < 1:1158103/150‑1 (MQ=255) gccgGTTCCGCACTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGaaa < 2:569166/150‑1 (MQ=255) ttCCGCACTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCgg > 2:1095148/1‑150 (MQ=255) ttCCGCACTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCgg < 1:32932/150‑1 (MQ=255) cGCACTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGctc < 2:571683/150‑1 (MQ=255) cTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCa < 1:95390/150‑1 (MQ=255) ggCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATg < 2:690330/150‑1 (MQ=255) ccGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGgc > 1:109242/1‑150 (MQ=255) gTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGGTGAAATCCGGCTCTTCATGGCGCGGCAgg > 2:450421/1‑150 (MQ=255) gTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAgg > 2:542899/1‑150 (MQ=255) tGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAggg > 2:201198/1‑150 (MQ=255) cTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTc > 1:758453/1‑150 (MQ=255) ccatccaACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGcc < 2:49839/150‑1 (MQ=255) catccaACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGGTGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCg > 2:1186812/1‑150 (MQ=255) catccaACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCg > 2:753745/1‑150 (MQ=255) atccaACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCgg > 1:798488/1‑150 (MQ=255) tccaACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCggg < 1:542899/150‑1 (MQ=255) ccaACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGt < 2:109242/150‑1 (MQ=255) ccaACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGt > 1:58315/1‑150 (MQ=255) cGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGc < 2:798488/150‑1 (MQ=255) gCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGGTGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCa < 1:450421/150‑1 (MQ=255) gCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCa < 1:753745/150‑1 (MQ=255) cccGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCGCTTCAAt < 1:943258/150‑1 (MQ=255) ggCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGCTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCcag < 1:969183/150‑1 (MQ=255) cgcTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGGTGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCcagca < 1:1186812/150‑1 (MQ=255) gcTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGa > 1:785691/1‑89 (MQ=255) gcTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGa < 2:785691/89‑1 (MQ=255) gTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTg > 1:67288/1‑150 (MQ=255) tttctttcGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCa < 2:1171364/150‑1 (MQ=255) ttctttcGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTTTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCAc < 1:201198/150‑1 (MQ=255) tttcGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCCCTTc > 2:856525/1‑150 (MQ=255) tttcGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGAATCAAGCAGGCCCATCATGACTCGGCAGGGTATCCAGGGTAGGAACGGCAGTGTCCGCCAGCAGTTGCACTTc > 1:21805/1‑150 (MQ=255) ttcttGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCACTTGCCCTTCAGCCGca < 2:900917/150‑1 (MQ=255) gCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCa < 2:758453/150‑1 (MQ=255) ttcttcGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGc < 1:921102/150‑1 (MQ=255) ttcGTTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGaa > 2:1172609/1‑150 (MQ=255) tcGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGTATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCCCCCACCAGCGcaa > 2:533539/1‑150 (MQ=255) cGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAAt < 1:1095148/150‑1 (MQ=255) cTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAAtcgcctc < 2:58315/150‑1 (MQ=255) aTAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGccc < 2:700881/150‑1 (MQ=255) aCCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCACACACACCAGCGAAATCGCCTCGCCCttg > 1:737907/1‑150 (MQ=255) cTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCttgtt > 2:590794/1‑150 (MQ=255) tGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCACACACACCAGCGAAATCGCCTCGCCCttgttg < 2:737907/150‑1 (MQ=255) gCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTgc < 1:590794/150‑1 (MQ=255) ccACTGGCATCGGTCATCGGCAGCCGGTGGGCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTgccc < 2:881854/150‑1 (MQ=255) aCTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAgg < 2:1107017/64‑1 (MQ=255) aCTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAgg > 1:1107017/1‑64 (MQ=255) aCTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTgcccgc > 1:1185403/1‑150 (MQ=255) gTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTGCCCGCCCGCCCGGTa > 1:540740/1‑150 (MQ=255) gTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTGCCCGCCCGCCCGGTa > 2:851271/1‑150 (MQ=255) gTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTGCCCGCCCGCCCGGTa < 2:34078/150‑1 (MQ=255) tCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTgccc < 1:947131/137‑1 (MQ=255) tCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTgccc > 2:947131/1‑137 (MQ=255) tCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTGCCCGCCCGCCCGGTAc > 2:963810/1‑150 (MQ=255) ggATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTGCCCGCCCGCCCGGTACGCCCGATGCGGTGCACGTAGt < 1:851271/150‑1 (MQ=255) | TCACCGCCGGTTCCGCACTGGCCGCTTCAGTGCTGTCCATCCAACGCCCCAGCCCGCGCTTGGCGCTGTTTTCTTTCGGCTTCTTGGGCTTCTTCGGTTTCTTGATAACCTGCCCACTGGCATCGGTCATCGGCACCCGGTGCTCGGGGATGAAATCCGGCTCTTCATGGCGCGGCAGGGTCTGCCGGGTCAGCACTTCAATGGCCGCCAGCAGTTGCACTTCATCCGCACACACCAGCGAAATCGCCTCGCCCTTGTTGCCCGCCCGCCCGGTACGCCCGATGCGGTGCACGTAGT > NC_002947/5426875‑5427171 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |