Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,429,807 | T→G | 8.2% | E24A (GAG→GCG) ‡ | PP_4768 ← | exonuclease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,429,807 | 0 | T | G | 8.2% | 126.5 / 4.7 | 49 | E24A (GAG→GCG) ‡ | PP_4768 | exonuclease |
Reads supporting (aligned to +/- strand): ref base T (23/22); new base G (2/2); total (25/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.45e-01 |
TTCTCCACCGGCGGCGCACTGCGCAGCATGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGATCAGTGACAACGCC > NC_002947/5429663‑5429956 | ttCTCCACCGGCGGCGCACTGCGCAGCATGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTg < 2:141070/150‑1 (MQ=255) ccACCGGCGGCGCACTGCGCAGCATGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCGAGGTGGcgg < 2:724533/150‑3 (MQ=255) cACCGGCGGCGCACTGCGCAGCATGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTCGCGGCTGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACg > 1:379512/1‑150 (MQ=255) cggcggCGCACTGCGCAGCATGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCa < 1:467915/150‑1 (MQ=255) cgcACTGCGCAGCATGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGt < 2:262929/150‑1 (MQ=255) cagcaTGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCCCCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGa > 1:854542/1‑150 (MQ=255) cagcaTGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGa > 1:150859/1‑150 (MQ=255) ggCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGAAGGAACCGGCAGGCTAGTATTCAGCAGGCTTTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATAcc > 2:740791/1‑150 (MQ=255) cGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCgg > 2:1082688/1‑150 (MQ=255) ggtggtAATGCCGGTCAGCCCTGCGACGAAGGCTGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCggt < 2:307703/150‑1 (MQ=255) gtggtAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCggt < 2:75824/149‑1 (MQ=255) gtggtAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCggt > 1:75824/1‑149 (MQ=255) tAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACGGCCACCTCGGTGCAACGGCAGCCGGTACCGGGGGAAATACCGGTGGttt > 2:528682/1‑150 (MQ=255) tCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGa < 1:540742/150‑1 (MQ=255) aGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCGAGGTGGcggtg < 2:653010/108‑5 (MQ=255) aGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCGAGGTGGcggtg > 1:653010/1‑104 (MQ=255) gCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGa < 1:949369/150‑1 (MQ=255) cTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCgggg < 2:903475/119‑1 (MQ=255) cTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCgggg > 1:903475/1‑119 (MQ=255) tGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGaa > 2:359353/1‑121 (MQ=255) tGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGaa < 1:359353/121‑1 (MQ=255) gacgaAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGAt > 2:159293/1‑150 (MQ=255) ccggcaccggcaCGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCa < 2:1064557/150‑1 (MQ=255) cggcaccggcacGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCAt > 2:982831/1‑150 (MQ=255) cggcacGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAg > 1:1078602/1‑150 (MQ=255) cAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTc > 2:656610/1‑115 (MQ=255) cAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTc < 1:656610/115‑1 (MQ=255) cAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAgt < 1:159293/150‑1 (MQ=255) aTTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGttt > 2:1049282/1‑150 (MQ=255) ctctGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAgc > 2:830649/1‑150 (MQ=255) ctGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAgcgc < 2:1078602/150‑1 (MQ=255) gTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGcc > 2:416582/1‑150 (MQ=255) gcTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCCCGCCTTCGa > 2:1052180/1‑150 (MQ=255) cTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGAt < 1:830649/150‑1 (MQ=255) aaTGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATTGGCAc > 2:641740/1‑150 (MQ=255) aaTGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCAc < 1:740791/150‑1 (MQ=255) aCCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGa < 1:783123/134‑1 (MQ=255) aCCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGt < 1:416582/150‑1 (MQ=255) aCCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAAGACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGa > 2:783123/1‑134 (MQ=255) aaGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGgcagc > 1:803978/1‑150 (MQ=255) ttACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGGCAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGa < 1:8861/150‑1 (MQ=255) ttACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACTTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGa < 1:364797/150‑1 (MQ=255) ccaccGCCACCTCGGTGGCACGGCAGCCGGTACCGCGGGAAATACCGGAGGTTTCAAAGTCGATGACAGCGGTACGTTCCATGAAAAGACCTTATGGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGATCa > 2:440692/1‑150 (MQ=255) caccGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGtt < 2:1122537/52‑1 (MQ=255) caccGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGtt > 1:1122537/1‑52 (MQ=255) cgtgCCACCGAGGGGGCACGGCAGGCGGTACCGGGGGCAATACCGGTGGTTTCAAAGTCGACGACAGCGATACGTTCCTGGTATAGACCTTAGTGTATGCGCAACAGCGCGCCGTCGATGGTGACGTAACGGGTGGTAGCACGGATctgg > 2:212728/4‑147 (MQ=255) cccGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCGTTGAAAAGACCGTAGGGTTTTAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGATCAGt < 1:1052180/149‑1 (MQ=255) aCCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGATCAGTGACAAc > 1:715349/1‑150 (MQ=255) aCCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGATCAGTGACAAc < 2:803978/150‑1 (MQ=255) tCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGATCAGTGACAACGcc > 1:1148570/1‑150 (MQ=255) | TTCTCCACCGGCGGCGCACTGCGCAGCATGGCGGTGGTAATGCCGGTCAGCCCTGCGACGAAGGCCGGCACCGGCACGCCAGCATTCATCAGGCTCTGGTAGCGCTCGACAATGCGCCCACCCTCAAGCATTACCACCGCCACCTCGGTGGCACGGCAGCCGGTACCGGGGGAAATACCGGTGGTTTCAAAGTCGATGACAGCGATACGTTCCATGAAAAGACCTTAGTGTTTGAGCAACAGCGCGCCTTCGATGGGCACGTAGCGGGTGGCAGCACGGATCAGTGACAACGCC > NC_002947/5429663‑5429956 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |