Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,625,156 | T→G | 9.5% | Q219P (CAG→CCG) | PP_4943 ← | glycosyl transferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,625,156 | 0 | T | G | 9.5% | 133.4 / 8.2 | 53 | Q219P (CAG→CCG) | PP_4943 | glycosyl transferase |
Reads supporting (aligned to +/- strand): ref base T (23/25); new base G (2/3); total (25/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.08e-01 |
GGAAATAACGGCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCAGGGCGTCGATGTCG > NC_002947/5625007‑5625302 | ggAAATAACGGCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCt > 1:925344/1‑150 (MQ=255) gAAATAACGGCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTg < 2:497166/150‑1 (MQ=255) aaaTAACGGCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTgg < 2:493776/150‑1 (MQ=255) aaTAACGGCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTggg < 2:725198/150‑1 (MQ=255) cGGCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCaaaa < 2:576600/150‑1 (MQ=255) ggCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGGGGATGGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAAc > 1:865836/1‑150 (MQ=255) ggCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCAGGCACTGCCGGGGctgccg < 2:981346/150‑6 (MQ=255) cGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCATTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAg > 1:757932/1‑150 (MQ=255) ccTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTgg < 2:925344/150‑1 (MQ=255) cTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGc > 2:773191/1‑150 (MQ=255) tGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGcc > 2:323150/1‑150 (MQ=255) tGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGcc > 1:564771/1‑150 (MQ=255) ccAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGa < 2:748654/150‑1 (MQ=255) ccAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGa < 2:109843/150‑1 (MQ=255) gAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGc > 1:365023/1‑142 (MQ=255) gAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGc < 2:365023/142‑1 (MQ=255) aGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATCGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACa < 2:1167030/132‑1 (MQ=255) aGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATCGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACa > 1:1167030/1‑132 (MQ=255) gACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCgg > 2:582904/1‑150 (MQ=255) gCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCa < 1:497460/150‑1 (MQ=255) ccGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAgg > 2:929798/1‑150 (MQ=255) cAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGcc < 1:412358/150‑1 (MQ=255) ccAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCATTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACa < 2:1040704/150‑1 (MQ=255) aaGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACAtt > 1:320512/1‑150 (MQ=255) ggcggcCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCAGGCACTGCCGGGGctgcc > 1:82472/1‑90 (MQ=255) ggcggcCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCAGGCACTGCCGGGGctgcc < 2:82472/94‑5 (MQ=255) cggcCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCcgacga < 2:615202/150‑1 (MQ=255) ggcCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGAt < 1:582904/150‑1 (MQ=255) aaCGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCcga < 1:847216/142‑1 (MQ=255) aaCGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCcga > 2:847216/1‑142 (MQ=255) cTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTg > 2:915209/1‑150 (MQ=255) gCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCAt > 1:864099/1‑150 (MQ=255) gACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGt > 1:1105443/1‑99 (MQ=255) gACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGt < 2:1105443/99‑1 (MQ=255) ccTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTTgc < 1:1207130/150‑1 (MQ=255) ccTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGgc > 2:1028735/1‑150 (MQ=255) gCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGgcgtgc < 1:323150/150‑1 (MQ=255) cGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGgcgtgcgt > 1:313591/1‑150 (MQ=255) aGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCa < 2:757932/150‑1 (MQ=255) ggATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGGAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAg < 2:812673/150‑1 (MQ=255) ccAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGgcgt > 2:370391/1‑137 (MQ=255) ccAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGgcgt < 1:370391/137‑1 (MQ=255) cAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGgctg > 1:863673/1‑150 (MQ=255) ccGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCtt < 2:708865/55‑1 (MQ=255) ccGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCtt > 1:708865/1‑55 (MQ=255) gCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGgcgc < 1:186317/68‑1 (MQ=255) gCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGgcgc > 2:186317/1‑68 (MQ=255) ttgCCCAGGCACTGCCGGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCAg > 2:554721/3‑150 (MQ=255) cAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCAg < 1:773191/150‑1 (MQ=255) ccccGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCa < 2:700291/146‑1 (MQ=255) ccccGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCa > 1:700291/1‑146 (MQ=255) gCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCAGGGCgtcga > 1:306758/1‑150 (MQ=255) ctGCCGGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCAGGGCgtcgatgt < 1:554721/149‑1 (MQ=255) gCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCAGGGCgtcgatgtcg > 2:1092830/1‑150 (MQ=255) | GGAAATAACGGCGCGCATCCGGTACCTGGCCAAGAAAGTCGACTTGCCCGGCAATGCCAAGTTCGGCGGCCAACGCCTTGAGCCTGGCCTCCAGACGCCCCTTGCCGAGGATTGCCAGGCGGGCGCCAGCCGGCAGCCCCGGCAGTGCCTGGGCAAAACCGCGCAACAGGGTGGCCTGATCCTTGTCCGGGTGCAGGCGCCCAACATTGCCGACGATCCACGCCTGAGCATCCAGGCCCAAGGCCTGGCGTGCGTCAGCGCGCGGCACCAGGGCTGCTTGCAGGGCGTCGATGTCG > NC_002947/5625007‑5625302 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |