New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1970782 | 50 (0.860) | 8 (0.160) | 8/250 | 5.5 | 15.2% | intergenic (+33/‑233) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region |
? | NC_002947 | = 1970844 | 46 (0.920) | intergenic (+95/‑171) | mtnA/PP_mr25 | methylthioribose‑1‑phosphate isomerase/gyrA regulatory region | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCA > NC_002947/1970697‑1970991 | gcCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAg > 2:1078670/1‑150 (MQ=255) ccGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGcc > 1:1100044/1‑150 (MQ=255) gctgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGaa < 1:698833/150‑1 (MQ=255) tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAaga > 2:748817/1‑150 (MQ=255) tgcCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAaga < 1:844654/150‑1 (MQ=255) ccaGCTGGCTCAGCTGGTTCGCCGCAAGCGCCTGCACTGATTTTGTAGCGCCTCACCGGCCTCTTCTCGGGCTTGCCCGCTCCCTCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGc < 1:91950/148‑1 (MQ=255) aGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCg < 1:79144/150‑1 (MQ=255) ggCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGc < 1:584252/150‑1 (MQ=255) cTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg < 1:1078670/150‑1 (MQ=255) cTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATAGCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg < 2:559660/150‑1 (MQ=255) aGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGAATATCGCATGGCCTTAGGGCCGTGGTGCACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCa > 2:183551/1‑150 (MQ=255) cTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGACCGCGAAGAGGCCGGTGCAGGCAAt > 2:512013/1‑150 (MQ=255) ggTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATAc < 1:339408/150‑1 (MQ=255) gTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCTCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAAACTGGGGGGGCGGGCGAGCCCGCGAAGAGGCCGGAGCAGGCAATACa > 1:689339/1‑150 (MQ=255) ttGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACaaa < 2:887473/150‑1 (MQ=255) aaGCGCCTGCACTGATTTTGTATCGCCTCCCCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAgg < 1:651816/150‑1 (MQ=255) gcgcCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTTAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGtt > 2:658631/1‑150 (MQ=255) aCTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAgg > 1:116878/1‑140 (MQ=255) aCTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAgg < 2:116878/140‑1 (MQ=255) cTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGCGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGcgcg < 1:909735/150‑1 (MQ=255) gTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGAc < 2:1228845/150‑1 (MQ=255) ccccGGCCTCGGCGCCGGCGTTCCCGCCCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGGACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCa < 1:855600/148‑1 (MQ=38) gCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACctct < 1:1195776/150‑1 (MQ=255) cgGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGc > 1:844547/1‑150 (MQ=255) cgGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGc > 1:1295291/1‑150 (MQ=255) cgGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGc > 1:1295433/1‑150 (MQ=255) gCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGcccc > 2:540502/1‑150 (MQ=255) ccGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGtt > 2:797023/1‑150 (MQ=255) ccGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGGGGTGAACCTGAGAGGGCGGGCAAGCCCGCGAAGAGGCCGAGGCAGGCAAGACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGtt > 1:166554/1‑150 (MQ=255) cGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGttt > 2:708320/1‑150 (MQ=255) ccaaCTGGGATATCGCCTGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGCCAATACAAAAACCAGGTTTCACGCGCGGCTGAGACCAACTGGCACCTCTCCCCACCGCCCCCGCGTTTGTGa < 1:210124/147‑1 (MQ=39) aCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATaa > 2:447240/1‑150 (MQ=255) aCTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATaa > 1:474295/1‑150 (MQ=255) tGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGcca < 2:871103/76‑3 (MQ=255) tGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCaa > 1:871103/1‑76 (MQ=255) gATATCGCATGGCCTTAGGGCCGTGGTTAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATcc < 1:658631/150‑1 (MQ=255) atatCGCATGGCCTTAGGGCCGTGGAGAACCTGTGGGGGCGGGCGAGGCCGAGAAGAGGCCGGTGGAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCg > 2:295590/1‑150 (MQ=255) ccgtAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCaa < 1:121050/147‑1 (MQ=255) ccTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATACGGCAGTTTCCaa > 1:634730/1‑150 (MQ=255) cTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAg > 1:347891/1‑150 (MQ=255) aGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGAcc > 2:208995/1‑150 (MQ=255) ggCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGc < 2:1060632/150‑1 (MQ=255) ccGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGccc > 2:1268111/1‑150 (MQ=255) gtgAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCAc > 2:243560/1‑150 (MQ=255) aaCCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGttt > 1:484227/1‑130 (MQ=255) aaCCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGttt < 2:484227/130‑1 (MQ=255) aCCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCAcggcg < 1:313657/150‑1 (MQ=255) ttcgcgggctCGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCCCAGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCa > 2:139588/4‑150 (MQ=255) ggcgggcgAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCAtt < 1:748817/150‑1 (MQ=255) ggcgggcgAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCAtt < 2:507941/150‑1 (MQ=255) ggcgggcgAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCAtt < 2:507892/150‑1 (MQ=255) gcgggcgAGCCCGCGACAAGTCCGGTGCAGGCAATACAAAAAACAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTg > 1:1319374/1‑150 (MQ=255) gcgAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCa > 1:189498/1‑150 (MQ=255) | GCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCTCACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACTGGGATATCGCATGGCCTTAGGGCCGTGGTGAACCTGTGGGGGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGCAATACAAAAACCAGGTTTCAAGCGCGGCTGAGACCAACTGCCACCTCTCCCCACCGCCCCCGCGTTTGTGATAACATCCGGCAGTTTCCAAGACCGCCCATCACGGCGGCCTTCATTGCGCA > NC_002947/1970697‑1970991 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |