New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4476053	35 (0.600)	10 (0.180)	9/276	5.7	23.1%	coding (243/321 nt)	PP_3966	transposase
	?	NC_002947	= 4476057	NA (NA)					coding (239/321 nt)	PP_3966	transposase
Rejected: Coverage evenness skew score above cutoff.

AAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATG  >  NC_002947/4475986‑4476206                                                                        |                                                                                                                                                      atgcgcGAATAAATTGCGCACAACCCTCGGGATCCCAGGCTTGCCATTTCACCGTGATCACCTGCCCGGTTACCGGCAGCTGGATGATCACTGACGCTTCGACTGGCCGTTTAGGGGCGGCTGTTCTCCGGACGAGCGCTGGTAGTGAAg                                                                         <  2:310324/145‑1 (MQ=1)             aTTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGCCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCa                                                             <  1:695302/150‑1 (MQ=11)              ttGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGACCACATCGCCAGTGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGAGGAAAGCTGGTAGTGCAGCCGCTGCGGGCAg                                                            >  1:83286/1‑150 (MQ=11)              ttGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCAATACTCGCTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAg                                                            <  1:90204/150‑1 (MQ=9)                  gcACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGAtct                                                        <  2:193291/150‑1 (MQ=32)                    acaACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCg                                                      >  2:330635/1‑150 (MQ=32)                    acaACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCg                                                      >  1:6323/1‑150 (MQ=32)                     caACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGa                                                     <  1:1219718/150‑1 (MQ=32)                     caACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGa                                                     <  2:1086788/150‑1 (MQ=32)                       aCCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATa                                                   <  2:572689/150‑1 (MQ=32)                             gggATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCgg                                             >  1:541052/1‑150 (MQ=32)                               gATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCNACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCa                                           >  1:904108/1‑150 (MQ=17)                                 tCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGc                                         <  2:855315/150‑1 (MQ=32)                                  ccGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGcc                                        >  2:603897/1‑150 (MQ=32)                                    gAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGGTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCAt                                      >  1:50437/1‑150 (MQ=17)                                    gAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGGGGCAGCCAt                                      >  1:618747/1‑150 (MQ=17)                                    gAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCAt                                      >  1:74799/1‑150 (MQ=32)                                       gCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCTCGTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTg                                   <  1:428424/150‑1 (MQ=12)                                        cTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGGGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGc                                  <  2:211290/150‑1 (MQ=17)                                           gCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGa                               >  1:834730/1‑150 (MQ=32)                                           gCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACCCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGa                               >  2:273449/1‑150 (MQ=17)                                            ccATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGAt                              <  1:1191149/150‑1 (MQ=32)                                            ccATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTAGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTTCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGAt                              <  1:1086480/150‑1 (MQ=17)                                             cATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATg                             >  1:479456/1‑150 (MQ=32)                                                ttCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACg                          <  2:311153/150‑1 (MQ=32)                                                  cACTGTGCTCACTTGCCCGGCCACGAGGAACTCGATGATCACTGACGCTTAGACTGGCCGTTTAGGTTCGGCTTTTAGGGGGACGAAAGCGGGTAGCGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGtt                        <  2:70205/150‑1 (MQ=11)                                                   aCCGTAACCACTTGCCGCGCCACGGGCAACGCGTTGATACCGGACGCTTGGCCTGGCCGTGTAGGTGCGGCTTTTAGCGGGACGAAAGCCGGTAGTCAAGCCGCTGCGGGCAGATCTCGATAGACCGGCAGCCATTTGCGGATGACGTTg                       <  2:242404/150‑1 (MQ=11)                                                    ccGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTgg                      <  2:904108/150‑1 (MQ=32)                                                       tGATCACTTGCCCGGCAACGGGCAACTCGAGGAGCACTGACGCTTAGAGTGGCCGTTTAGGTGGGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTGGCGGATGACGTTGCCac                   <  2:197187/150‑2 (MQ=11)                                                        gATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCAtt                  <  1:15618/150‑1 (MQ=32)                                                                gCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCACATCTCGAAAGAGCGGCAGCCTTTTGCGGAGTGCGTTTGCTTTGATGCCGt          >  2:13033/1‑150 (MQ=11)                                                                  ccGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTgg        <  1:1141587/150‑1 (MQ=32)                                                                   cGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGACAGCCATTCGCGGATGACGTTGGCATTGATGCCGTGGt       >  2:341567/1‑150 (MQ=17)                                                                    ggCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGtt      <  2:1215827/150‑1 (MQ=32)                                                                        aCGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGGTTAGGTGCGGCTTTTAGCGTGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATg  <  1:489307/150‑1 (MQ=17)                                                                        |                                                                                                                                                      AAGCCCGAATAAATTGCGCACAACCCTCGGGATCCGAGGCTGGCCATTTCACCGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTGAAGCCGCTGCGGGCAGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGTTGATG  >  NC_002947/4475986‑4476206

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.