New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 401299	NA (NA)	10 (0.310)	8/258	2.5	22.8%	coding (882/1059 nt)	PP_0334	transposase
	?	NC_002947	= 401390	35 (1.070)					coding (973/1059 nt)	PP_0334	transposase

GCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTgatt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/401217‑401299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGT  <  NC_002947/401390‑401238                                                                                                                                                                                                                                              GCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGAATTCAGACGTGTGCTATCTAAGGCCTGATTCCGAACAGCCAG‑CTGATCGCCGCCTCCTGGGGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGG                                                                                       <  1:593915/150‑1                            ACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGG                                                             <  1:246577/150‑1                                         GATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGG                                                                                       <  1:596792/111‑1                                         GATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGG                                                                                       >  2:596792/1‑111                                               CCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAG‑ATGATCTCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGA                                                                                    >  1:528509/1‑107                                               CCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAG‑ATGATCTCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGA                                                                                    <  2:528509/107‑1                                               CCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAG‑ATGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA                                                                                              <  1:108520/97‑1                                               CCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAG‑ATGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAA                                                                                              >  2:108520/1‑97                                                          ATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGC                                                                           >  1:647511/1‑106                                                          ATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGC                                                                           <  2:647511/106‑1                                                                                     ATTCCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCC    <  1:693272/150‑1                                                                                       TTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGT  >  2:163585/1‑150                                                                                                                                                                                                                                              GCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTgatt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/401217‑401299 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTCGATTAGCCAGCCTGATCGCCGCCTCCTTGCGCCCAAGGCGGGATAGCCAGCGCAAGAGGCGGCGATCATCTGGCTGATCGGAATCAGGCCTTAGCTGGCTCAAGACGGAATGCGCGCCCTGGATCATCAGGCTGCGTATGTAGCCGT  <  NC_002947/401390‑401238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.