New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2295818 =	36 (1.100)	10 (0.370)	9/218	1.8	28.0%	intergenic (+21/+112)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	2295903 =	22 (0.820)					intergenic (+106/+27)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein

CAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGC  >  NC_002947/2295758‑2296047                                                                                                                                                  |                                                                                                                                                 cAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGAc                                                                                                                                              <  2:366847/150‑1 (MQ=255)         aTGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGc                                                                                                                                      >  1:533943/1‑150 (MQ=255)         aTGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGc                                                                                                                                      <  2:533943/150‑1 (MQ=255)                 cTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGAt                                                                                                                              <  2:575541/150‑1 (MQ=255)                   gAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGt                                                                                                                            <  2:118525/150‑1 (MQ=255)                      tGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGTGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCACGTGCAGCCCGCTGTTTa                                                                                                                         >  1:330532/1‑150 (MQ=255)                          aaGCACCACCACTGATCTGGCTTGTGTGAGACCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCa                                                                                                                     >  1:362759/1‑150 (MQ=255)                            gCACCACCGCTGATCTTGCTTGTGTGAGGTCCTTATGGGAGCGGGCATTCCCGCGAACACCGGCAGAGCCGGGGCCATCCGCCGCGGTGCCCGCTTCACGCGCATGCTCTCTCCCACACGGACCCATGTGCAGCCCGATGTTTAACCAGc                                                                                                                   <  2:386387/150‑1 (MQ=37)                               ccaccacTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGa                                                                                                                >  1:571417/1‑150 (MQ=255)                                                        gTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGATGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGa                                                                                       >  2:726266/1‑150 (MQ=255)                                                         tCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGaa                                                                                      <  1:726266/150‑1 (MQ=255)                                                           cTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGcc                                                                                                     <  2:720420/133‑1 (MQ=255)                                                           cTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGcc                                                                                                     >  1:720420/1‑133 (MQ=255)                                                                    gcgggcatgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGaa                                                                                                <  2:103427‑M2/51‑1 (MQ=255)                                                                    gcgggcatgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGaa                                                                                                >  1:103427‑M2/79‑129 (MQ=255)                                                                        gcatgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGttt                                                                                                                          >  1:804607‑M2/75‑99 (MQ=255)                                                                        gcatgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGttt                                                                                                                          <  2:804607‑M2/25‑1 (MQ=255)                                                                           tgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACATCTCCGAAGCCAGCCACCCCTcca                                                                      <  2:418663‑M2/77‑1 (MQ=255)                                                                           tgcccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGGTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTcca                                                                      >  1:418663‑M2/72‑148 (MQ=255)                                                                             CCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCGTCGCGGGCATGCCGGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTccagcca                                                                  <  1:393468‑M1/150‑1 (MQ=255)                                                                              ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAAt                                                                                                                       <  1:434821‑M2/28‑1 (MQ=255)                                                                              ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAAt                                                                                                                       >  2:434821‑M2/69‑96 (MQ=255)                                                                              ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCTATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCAccc                                                                           <  1:544942‑M2/72‑1 (MQ=255)                                                                              ccgcgaagcgggcaccgcggtggatggcaccggctctgccggtgttcgcgggcatgcccgctcccacaAGGACCTATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCAccc                                                                           >  2:544942‑M2/69‑140 (MQ=255)                                                                                      aacgccAGAGCCGGTGCCATCCAACGCTGTGCCCGGTTCGCGGTCATGCCAGCACCCACACGGAACCGTGTGCAGCCCGGTGTTTAATCAGCAGAGCATAGTTGCCTTGAACAGCTCCGAAGCCAGCGACCCCTCCGGCCGACTCCGcac                                                         >  2:292836/6‑150 (MQ=255)                                                                                              agCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGACCTCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGAt                                                 <  1:176192/150‑1 (MQ=255)                                                                                                    tGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAACTCCGCACACGCGGATAAgccg                                           >  2:438869/1‑150 (MQ=255)                                                                                                       cATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagcca                                                                                  >  1:15869/1‑108 (MQ=255)                                                                                                       cATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAagcca                                                                                  <  2:15869/108‑1 (MQ=255)                                                                                                        aTCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATaa                                               <  1:70049/142‑1 (MQ=255)                                                                                                        aTCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATaa                                               >  2:70049/1‑142 (MQ=255)                                                                                                               gcgGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAAc                                >  1:442637/1‑150 (MQ=255)                                                                                                                     cccGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGc                          >  1:768912/1‑150 (MQ=255)                                                                                                                          ttcgcgggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCGCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTc                     <  2:362759‑M2/126‑1 (MQ=255)                                                                                                                               gggcatgcccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGAccc                >  2:415511‑M2/20‑150 (MQ=255)                                                                                                                                       ccgctcccacaCGGACCCATGTGCAGCCCGATGtt                                                                                                                           <  2:393171‑M2/24‑1 (MQ=255)                                                                                                                                       ccgctcccacaCGGACCCATGTGCAGCCCGATGtt                                                                                                                           >  1:393171‑M2/12‑35 (MQ=255)                                                                                                                                       ccgctcccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAAc        >  1:233155‑M2/12‑150 (MQ=255)                                                                                                                                             ccacaCGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCCCTGCGGTTCGACCCCGCCAACCTGgcgc  >  2:411276‑M2/6‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                 CAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTGAGGTCCTTGTGGGAGCGGGCATGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGCCCGCTTCGCGGGCATGCCCGCTCCCACACGGACCCATGTGCAGCCCGATGTTTAATCAGCGGACCATGATTGCCTTGAACAGCTCCGAAGCCAGCCACCCCTCCAGCCAGCTCCGCACACGCGGATAAGCCGCCTCGGCGAACCACTGCGGTTCGACCCCGGCAAACTGGCGC  >  NC_002947/2295758‑2296047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.