| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5477138 = | 35 (0.700) | 12 (0.350) | 9/186 | 2.6 | 41.2% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5477237 = | 10 (0.290) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
AGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCA > NC_002947/5477121‑5477371 | aGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAGACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAAt > 2:1194220/1‑150 (MQ=255) atatTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCca < 1:1194220/150‑1 (MQ=255) CTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATa < 1:964141‑M1/97‑1 (MQ=255) CTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATa > 2:964141‑M1/1‑97 (MQ=255) CTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGAt < 1:1190387‑M1/150‑1 (MQ=255) CTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGACGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGAt < 1:609623‑M1/150‑1 (MQ=255) CGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGcc < 2:227283‑M1/150‑1 (MQ=255) GCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCca > 1:654389‑M1/1‑129 (MQ=255) GCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCca < 2:654389‑M1/129‑1 (MQ=255) GCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCa < 1:947349‑M1/150‑1 (MQ=255) CCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAg > 2:1190387‑M1/1‑150 (MQ=255) TATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTccccc > 1:1203399‑M1/1‑113 (MQ=255) TATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGGTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTccccc < 2:1203399‑M1/113‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGaa < 1:1054078‑M1/89‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGaa > 2:1054078‑M1/1‑89 (MQ=255) GGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCtgt < 1:164679‑M1/150‑1 (MQ=255) GTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCt < 1:734678‑M1/126‑1 (MQ=255) GTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCt > 2:734678‑M1/1‑126 (MQ=255) cccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTgg < 1:1032377‑M2/76‑1 (MQ=255) cccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTgg > 2:1032377‑M2/71‑146 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCg < 2:1042662‑M2/37‑1 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCg > 1:1042662‑M2/70‑106 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAAt > 1:1266901‑M2/70‑150 (MQ=255) ccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAAt > 1:1170857‑M2/70‑150 (MQ=255) CCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACGATCAGGCGAACA‑ACTCCCCCTGAATCCTCGTCATCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGAGAAt < 1:597822‑M1/150‑1 (MQ=255) CCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAg < 2:976726‑M1/83‑1 (MQ=255) CCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAg < 2:977580‑M1/83‑1 (MQ=255) CCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAg > 1:977580‑M1/1‑83 (MQ=255) CCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAg > 1:976726‑M1/1‑83 (MQ=255) CCGCTCCTACGCACGGGATCGCGCTCATCGTAGGAGCGGGGTTACCCGCGAATAGGCCGGCACAGGCAATACAGGACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAAt < 2:720679‑M1/150‑1 (MQ=255) cgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGaac > 2:1039103‑M2/69‑88 (MQ=255) cgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGaac < 1:1039103‑M2/20‑1 (MQ=255) cgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCtgt < 2:330226‑M2/74‑1 (MQ=255) cgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCtgt > 1:330226‑M2/69‑142 (MQ=255) CTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGa > 2:947349‑M1/1‑150 (MQ=255) TCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAg < 2:129083‑M1/150‑1 (MQ=255) cctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAgg < 2:1170857‑M2/86‑1 (MQ=255) tACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATGAGGC‑ATCATACAGCTCTTTAAACGGCTCCAGCAGCTTTTGGATCTCGCCCAGCCGCTGCTGTGGTGAATTGGGGGt > 1:408666/1‑150 (MQ=25) gataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTcag < 2:1266901‑M2/91‑1 (MQ=255) GCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACGGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAg < 2:97322‑M1/150‑1 (MQ=255) gATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTccc < 1:948269/80‑1 (MQ=255) gATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTccc > 2:948269/1‑80 (MQ=255) gcgcTTATCGTAGGAGCCGTTTTACCCGCGAATAGGCCGGCACATGCAATACAGAACCATCATGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGTATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGc < 2:408666/150‑1 (MQ=255) cgcTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCt > 1:383887/1‑150 (MQ=255) cTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACGGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTg < 1:97322/150‑1 (MQ=255) ttATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGcc < 1:113662/106‑1 (MQ=255) ttATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGcc > 2:113662/1‑106 (MQ=255) taggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAgg > 2:383812‑M2/40‑125 (MQ=255) taggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAgg < 1:383812‑M2/86‑1 (MQ=255) taggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCtt > 2:168789‑M2/40‑150 (MQ=255) aggcgcgagtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTc < 1:168789‑M2/112‑1 (MQ=255) gcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAggg < 1:434336‑M2/87‑1 (MQ=255) gcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAggg > 2:434336‑M2/35‑121 (MQ=255) gtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGc < 1:312967‑M2/101‑1 (MQ=255) gtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGGCAGCAGGTCCAGc > 2:312967‑M2/31‑131 (MQ=255) cccgcgaataggccggtacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCACTGAATCCGCTCGAGCAGCTGCTCAATGTAGCCCAGCCGCTGCTGTGACGCATCCAGGTTCAGCATGTCCAGCTTGTCCTCTTCCATGAACGGCAAc < 1:720679‑M2/125‑1 (MQ=255) ccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACa > 1:1165333‑M2/25‑150 (MQ=255) cgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAg < 1:227283‑M2/127‑1 (MQ=255) ggccggcacaggcaaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCa > 1:630218‑M2/16‑150 (MQ=255) aaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTc > 2:221608‑M2/3‑108 (MQ=255) aaTACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTc < 1:221608‑M2/106‑1 (MQ=255) | AGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACA‑ACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCGCTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCA > NC_002947/5477121‑5477371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |