New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3602262	16 (0.990)	4 (0.260)	4/244	NT	20.9%	coding (936/1170 nt)	PP_3177	hypothetical protein
	?	NC_002947	= 3602291	15 (0.970)					coding (965/1170 nt)	PP_3177	hypothetical protein

CTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3602154‑3602262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctgTCCTTGGCGCGGATGCGCTGCAACGGCTCCAGCAGCTC  <  NC_002947/3602291‑3602254                                                                                                                                                     CTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCACTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGTCCTTGGCGCGGATGCGCTGCAACGGCTCCAGCAGCTC  >  1:269034/1‑147 CTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCACTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGTCCTTGGCGCGGATGCGCTGCAACGGCTCCAGCAGCTC  <  2:269034/147‑1                    CCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGTCCTTGGCGCGGATGCGCTGCAACGGCTCCAGCAGC    <  1:419274/126‑1                    CCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTGTCCTTGGCGCGGATGCGCTGCAACGGCTCCAGCAGC    >  2:419274/1‑126                                                                                                                                                     CTACGGCCGTGAGGTATTGCCCAGCGAACGATTGCTCAGCCTGCAGCGATACCGGCTGCCGGCGCTGCTGTGGCGCCACCGTAACGACGACGCGCTGGACGAGCTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3602154‑3602262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgctgTCCTTGGCGCGGATGCGCTGCAACGGCTCCAGCAGCTC  <  NC_002947/3602291‑3602254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.