New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3795313	18 (1.110)	3 (0.190)	3/248	NT	16.9%	coding (1184/1884 nt)	fcs	feruloyl‑CoA‑synthetase
	?	NC_002947	= 3795375	12 (0.770)					coding (1122/1884 nt)	fcs	feruloyl‑CoA‑synthetase

CCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3795161‑3795313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggCGAACGCATCCGCATGATGGCCGGCCTTGGCATGACCGAAGCCTCGCCATCGTGCACCTTCACCACCG  <  NC_002947/3795375‑3795308                                                                                                                                                                                                                               CCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCCGGTGCCGGCAGCCCGACATAGCCGGCCATCGCCAAAGGCCAGG                                                                         >  2:101851/1‑150  CTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGT                                                                        >  1:290583/1‑150                                                                        TTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGGCGAACGCATCCGCATGATGGCCGGCCTTGGCATGACCGAAGCCTCGCCATCGTGCACCTTCACCACCG  <  2:225946/150‑1                                                                                                         CCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGGCGAACGCATCCGCATGATGGCCGGCCT                                           <  1:98562/76‑1                                                                                                         CCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGGCGAACGCATCCGCATGATGGCCGGCCT                                           >  2:98562/1‑76                                                                                                                                                                                                                               CCTCGGCGGTCTGCTGCGGCGAGCGCCAGTAGCCCGGCATGATATGCGGGCCACGGAAGCGCGCCTCGAGCTTGTCGCCCACCGGCACCAGCTTCACTTCGCAGCCAGGTGCCGGCAGCCCGACATAGCCGGCCATCGACAAAGGCCCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3795161‑3795313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggCGAACGCATCCGCATGATGGCCGGCCTTGGCATGACCGAAGCCTCGCCATCGTGCACCTTCACCACCG  <  NC_002947/3795375‑3795308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.