New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5238687	10 (0.620)	4 (0.250)	4/250	NT	26.0%	coding (151/204 nt)	PP_5701	hypothetical protein
	?	NC_002947	= 5238796	13 (0.820)					intergenic (+56/‑225)	PP_5701/PP_4616	hypothetical protein/hypothetical protein

TGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5238587‑5238687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTC  <  NC_002947/5238796‑5238648                                                                                                                                                                                                                                                            TGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAA                                                                                                      >  2:21464/1‑150                           TTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGT                                                                            >  2:17459/1‑150                                   GCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGG                                                                    <  1:17459/150‑1                                         GTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGC                                                              <  1:21464/150‑1                                                                                                     GCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTC  >  1:403400/1‑150                                                                                                                                                                                                                                                            TGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5238587‑5238687 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggCAGGTCCGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAAGTCTTGACTACTGTGGTGACCGCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTC  <  NC_002947/5238796‑5238648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.