New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6161965 =	24 (1.480)	3 (0.190)	3/244	NT	12.3%	intergenic (+5/+18)	PP_5403/PP_5404	hypothetical protein/TnsC‑like transposition protein
	?	NC_002947	6161996 =	20 (1.300)					coding (1334/1347 nt)	PP_5404	TnsC‑like transposition protein

GATGAGAAAGCTCTGGCCAAAGCGCCCCGTCGTAAACCGCTTCCAAAGGCGACCGACGAAGACCTAGCACTAGCCTTCCATCGATACGCGGACTCACAGTCCCCGTCCTTACCCCCTAAAAAGCCGAAGTAGCATGTCCAGCTTGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6162114‑6161965 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctttTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCTTTCTCATCCGGTTGGGTGATCTGCCTCAGTAGGGA  >  NC_002947/6161996‑6162141                                                                                                                                                                                                                                                                                                          GATGAGAAAGCTCTGGCCAAAGCGCCCCGTCGTAAACCGCTTCCAAAGGCGACCGACGAAGACCTAGCACTAGCCTTCCATCGATACGCGGACTCACAGTCCCCGTCCTTACCCCCTAAAAAGCCGAAGTAGCATGTCCAGCTTGGCTTT                                                                                                                                                    >  1:366066/1‑150                                                                                                                 CCCCTAAAAAGCCGAAGTAGCATGTCCAGCTTGGCTTTTTAGGGGGTAAGGACGGGGCCTGTGAGTCCGCGTTGTGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCTT                                    >  1:388413/1‑150                                                                                                                   CCTAAAAAGCCGAAGTAGCATGTCCAGCTTGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGT                                                                                                 <  1:251241/87‑1                                                                                                                   CCTAAAAAGCCGAAGTAGCATGTCCAGCTTGGCTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGT                                                                                                 >  2:251241/1‑87                                                                                                                                                   CTTTTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCTTTCTCATCCGGTTGGGTGATCTGCCTCAGTAGGGA  <  2:255125/150‑1                                                                                                                                                                                                                                                                                                          GATGAGAAAGCTCTGGCCAAAGCGCCCCGTCGTAAACCGCTTCCAAAGGCGACCGACGAAGACCTAGCACTAGCCTTCCATCGATACGCGGACTCACAGTCCCCGTCCTTACCCCCTAAAAAGCCGAAGTAGCATGTCCAGCTTGGCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6162114‑6161965 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctttTTAGGGGGTAAGGACGGGGACTGTGAGTCCGCGTATCGATGGAAGGCTAGTGCTAGGTCTTCGTCGGTCGCCTTTGGAAGCGGTTTACGACGGGGCGCTTTGGCCAGAGCTTTCTCATCCGGTTGGGTGATCTGCCTCAGTAGGGA  >  NC_002947/6161996‑6162141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.