New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 86750 = | 17 (1.050) | 3 (0.210) | 3/224 | NT | 17.7% | intergenic (‑33/+112) | PP_0075/PP_0076 | choline sulfate transporter/choline betaine‑binding protein |
? | NC_002947 | 86841 = | 13 (0.920) | intergenic (‑124/+21) | PP_0075/PP_0076 | choline sulfate transporter/choline betaine‑binding protein |
GGCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCC > NC_002947/86605‑86897 | ggCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGACTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCtg > 1:82811/1‑150 (MQ=255) gCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCGCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCtgt > 1:350166/1‑150 (MQ=255) gcttcgatgaagtggccaaggcctgggtgaaagcgcatcctgaacggttggatgggtggttggccggagttaccaccaaggccgatggggatgccctggaggccgtcaaagccaaactgtaatctcacaaagcaacacaccaaCCCtgtg > 2:168182‑M1/144‑150 (MQ=255) tGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCAt < 2:179711/150‑1 (MQ=255) gccgcTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGccc > 1:301256/1‑150 (MQ=255) aaagcgcatcctgaacggttggatgggtggttggccggagttaccaccaaggccgatggggatgccctggaggccgtcaaagccaaactgtaatctcacaaagcaacacaccaaCCCTGTGGGa < 2:68238‑M1/10‑1 (MQ=255) aaagcgcatcctgaacggttggatgggtggttggccggagttaccaccaaggccgatggggatgccctggaggccgtcaaagccaaactgtaatctcacaaagcaacacaccaaCCCTGTGGGa > 1:68238‑M1/115‑124 (MQ=255) gcagGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCTGGCATGCCCGCGAAAAAGCCAAcgcg > 2:264232/1‑150 (MQ=255) gcatcctgaacggttggatgggtggttggccggagttaccaccaaggccgatggggatgccctggaggccgtcaaagccaaactgtaatctcacaaagcaacacaccaaCCCTGTGGGAGCgg < 2:394869‑M1/14‑1 (MQ=255) gcatcctgaacggttggatgggtggttggccggagttaccaccaaggccgatggggatgccctggaggccgtcaaagccaaactgtaatctcacaaagcaacacaccaaCCCTGTGGGAGCgg > 1:394869‑M1/110‑123 (MQ=255) tCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCt > 1:227286/1‑150 (MQ=255) cTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCGCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTg > 2:320756/1‑150 (MQ=255) gcgcAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGc > 2:172081/1‑113 (MQ=255) gcgcAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGc < 1:172081/113‑1 (MQ=255) cggagttaccaccaaggccgatggggatgccctggaggccgtcaaagccaaactgtaatctcacaaagcaacacaccaaCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCgg > 1:21177‑M1/80‑150 (MQ=255) caaggccgatggggatgccctggaggccgtcaaagccaaactgtaatctcacaaagcaacacaccaaCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTcgcg < 1:406167‑M1/70‑1 (MQ=255) caaggccgatggggatgccctggaggccgtcaaagccaaactgtaatctcacaaagcaacacaccaaCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTcgcg > 2:406167‑M1/68‑137 (MQ=255) ggAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTcc < 2:350166/149‑1 (MQ=255) cGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCTGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTga < 1:264232/150‑1 (MQ=255) cGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTga < 2:227286/150‑1 (MQ=255) aTGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTgaga < 1:320756/150‑1 (MQ=255) aTGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTgaga < 2:301256/150‑1 (MQ=255) tCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGc < 2:82811/150‑1 (MQ=255) acaATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCttt > 2:404256/1‑150 (MQ=255) tCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACg < 1:149004/150‑1 (MQ=255) cTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGC‑CGGACATTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGc < 1:27752/150‑1 (MQ=38) aGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATcccc > 1:107076/1‑150 (MQ=255) | GGCAGGGCGAGGATGGCGCCGCTCAGGCCTACCAGCAGGTCCTGGCGCAGGCTGCGGCCCGATTGGCGGGGAAGCCAGGTGAGGAAGGGCAGCAGTAAAGAGAGGCGATGCATGGGTTATCCACAATCCTTAAGGGGTCGCCAAGCCCTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACGCGTTGCTTGGCACCGGC‑TTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGGTTGGTGTGTTGCTTTGTGAGATTACAGTTTGGCTTTGACGGCCTCCAGGGCATCCCC > NC_002947/86605‑86897 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |