New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	386633 =	25 (1.540)	3 (0.190)	3/252	NT	12.6%	intergenic (‑95/‑231)	ltaE/glyA‑I	low specificity l‑threonine aldolase/serine hydroxymethyltransferase
	?	NC_002947	386722 =	17 (1.070)					intergenic (‑184/‑142)	ltaE/glyA‑I	low specificity l‑threonine aldolase/serine hydroxymethyltransferase

AGATACCGGAATAGTTGTCGCTGGCGAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATC  >  NC_002947/386490‑386779                                                                                                                                                |                                                                                                                                                   ttgtgtatctcccggcagcgatcgttttttgtcgtggggcactgtggccctttgtggcgatgttatgactggtggggccgggtcagatgcctgcgcacgccttgcaatggcgcgtttacgacattcgctgttgtgctgtttgcGCCGGcc                                                                                                                                              <  2:438138‑M1/7‑1 (MQ=255)          aaTAGTTGTCGCTGGCGAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCgg                                                                                                                                     <  2:346962/150‑1 (MQ=255)                      tGGCGAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCgcccgccc                                                                                                                         >  2:252928/1‑150 (MQ=255)                          gAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCcac                                                                                                                     >  2:123242/1‑150 (MQ=255)                          gAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCcac                                                                                                                     >  1:357807/1‑150 (MQ=255)                                ttgGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGt                                                                                                               >  1:156303/1‑150 (MQ=255)                                   gCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCt                                                                                                            <  1:287009/150‑1 (MQ=255)                                       ttGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCaa                                                                                                        >  2:242084/1‑150 (MQ=255)                                                  ggCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCAc                                                                                             >  2:342558/1‑150 (MQ=255)                                                   gCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACt                                                                                            <  1:123242/150‑1 (MQ=255)                                                         tCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTg                                                                                                           >  2:87667/1‑129 (MQ=255)                                                         tCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTg                                                                                                           <  1:87667/129‑1 (MQ=255)                                                         tCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAg                                                                                        >  1:387201/1‑148 (MQ=255)                                                         tCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAg                                                                                        <  2:387201/148‑1 (MQ=255)                                                           cTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGTTTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCTCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGc                                                                                    >  1:161096/1‑150 (MQ=255)                                                             gtgAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCgg                                                                                  <  2:83068/150‑1 (MQ=255)                                                               ttatgactggtggggccgggtcagatgcctgcgcacgccttgcaatggcgcgtttacgacattcgctgttgtgctgtttgcGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCa                                                                                              >  1:75146‑M1/82‑136 (MQ=255)                                                               ttatgactggtggggccgggtcagatgcctgcgcacgccttgcaatggcgcgtttacgacattcgctgttgtgctgtttgcGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCa                                                                                              <  2:75146‑M1/55‑1 (MQ=255)                                                                             aGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAgg                                                                  <  1:136624/150‑1 (MQ=255)                                                                                 ctctAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCa                                                              <  2:357807/150‑1 (MQ=255)                                                                                         gcctgcgcacgccttgcaatggcgcgtttacgacattcgctgttgtgctgtttgcGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAAc                                                      >  1:438138‑M1/56‑150 (MQ=255)                                                                                          aTCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACa                                                     >  1:270855/1‑150 (MQ=255)                                                                                             gATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGca                                                  <  1:252928/150‑1 (MQ=255)                                                                                                           cTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGca                                                  <  1:168424/136‑1 (MQ=255)                                                                                                           cTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGca                                                  >  2:168424/1‑136 (MQ=255)                                                                                                                          aGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGc                                                                                                          <  1:193674/65‑1 (MQ=255)                                                                                                                          aGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGc                                                                                                          >  2:193674/1‑65 (MQ=255)                                                                                                                                   tGTTCATTACTGTGCCGGCCCCTTACCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAACGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTg            >  1:150704/1‑150 (MQ=255)                                                                                                                                        aTTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTCTAGGAGCGGGTTCACCCGAGAAAGGGCCAGCGCAAACAGCACAACAGCGAATATCGTAAACGCGCCATTTCAAGGCGTGCGCAg       >  2:165926/1‑150 (MQ=255)                                                                                                                                             tgtgCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATc  <  2:270855/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   AGATACCGGAATAGTTGTCGCTGGCGAATTGTTGGCTCTTGTCTGTCATGGCACGGTCCTGTGAACGACGCAGATCAGCACTCTAAACCATCGATTCAGCACTTGCCTATACAACCCGTGCAGCGATTTCTGTTCATTACTGTGCCGGCCCCTTCGCGGGCGCGCCCGCCCCCACAATGGTCCTGCAAACGCCAATCACTGTAGGAGCGGGTTCACCCGCGAAAGGGCCAGCGCAAACAGCACAACAGCGAATGTCGTAAACGCGCCATTGCAAGGCGTGCGCAGGCATC  >  NC_002947/386490‑386779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.