New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4552017 | 3 (0.190) | 4 (0.330) | 4/190 | NT | 60.5% | intergenic (+67/+114) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
? | NC_002947 | = 4552068 | 3 (0.250) | intergenic (+118/+63) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
AAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCAC > NC_002947/4551871‑4552163 | aaaTGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGcaca > 2:205615/1‑150 (MQ=255) acaGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCcag > 1:40920/1‑150 (MQ=255) gCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCgaagcggcccctcgatgtctgtat > 2:218164‑M1/1‑126 (MQ=255) gcgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcgg > 1:205615‑M2/1‑146 (MQ=255) tAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggccc < 1:218164‑M1/150‑59 (MQ=255) ccTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcg > 2:8789‑M1/1‑87 (MQ=255) aCCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcga < 1:8789‑M1/150‑67 (MQ=255) gTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacac > 2:331939‑M2/1‑132 (MQ=255) gAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaa > 2:40920‑M2/1‑130 (MQ=255) ttGTGTCGCGATCGGGCCGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctc > 2:40920‑M1/1‑20 (MQ=255) gtgtCGCGATCGGGCCGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcac > 2:331939‑M1/1‑18 (MQ=255) tCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggt < 1:8789‑M2/150‑85 (MQ=255) cgATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtagg > 2:8789‑M2/1‑63 (MQ=255) gggCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggtta < 1:218164‑M2/150‑93 (MQ=255) ggCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCa > 1:298486/1‑99 (MQ=255) ggCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCa < 2:298486/99‑1 (MQ=255) ccGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggttacgc > 1:205615‑M1/1‑4 (MQ=255) | AAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCAC > NC_002947/4551871‑4552163 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |