New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 668084	30 (1.850)	4 (0.300)	4/208	NT	13.7%	intergenic (+45/+107)	yfhM/PP_0571	lipoprotein/membrane protein
	?	NC_002947	= 668153	26 (1.980)					intergenic (+114/+38)	yfhM/PP_0571	lipoprotein/membrane protein

GGCAAGGGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAGGCC  >  NC_002947/668008‑668301                                                                                                                                                  |                                                                                                                                                     ggCAAGGGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgc                                                                                                                                                  >  2:191234‑M2/1‑146 (MQ=255)                  gTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctccc                                                                                                                                 <  2:20752‑M2/150‑22 (MQ=255)                    gAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGTAGCCCTGtcgcgacgcaaggccgctcccac                                                                                                                               <  1:295753‑M2/150‑24 (MQ=255)                       aGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACaaa                                                                                                                            <  1:429062/150‑1 (MQ=255)                       aGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACaaa                                                                                                                            <  1:302191/150‑1 (MQ=255)                         cccGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGa                                                                                                                          >  2:37747/1‑150 (MQ=255)                          ccGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGGTAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGAc                                                                                                                         >  1:279166/1‑150 (MQ=255)                          ccGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCGGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGAc                                                                                                                         >  2:312551/1‑150 (MQ=255)                                   aCCCGCTCTACGGGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGCCAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGAt                                                                                                                <  2:79875/150‑1 (MQ=255)                                    cccGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATc                                                                                                               >  2:297148/1‑150 (MQ=255)                                     ccGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCAGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCa                                                                                                              >  2:444941/1‑150 (MQ=255)                                      cGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAg                                                                                                             <  2:279166/150‑1 (MQ=255)                                              gcgGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCAc                                                                                                     >  2:366111/1‑150 (MQ=255)                                                ggAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGACTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCAccc                                                                                                   >  2:60135/1‑150 (MQ=255)                                                ggAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAAATCAAGCGGCGAAGCTGAAAGCCTGGCGCTGCTGTGCGGCCCCGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCAccc                                                                                                   >  2:417150/1‑150 (MQ=255)                                                      tgtgGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCtca                                                                                             <  2:296401/150‑1 (MQ=255)                                                           gAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCAcc                                                                                        <  1:297148/150‑1 (MQ=255)                                                             gCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCAGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCca                                                                                      <  1:444941/150‑1 (MQ=255)                                                                gCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAg                                                                                   >  1:219756/1‑150 (MQ=255)                                                                          gcgATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatctccccttgcc                                                                         <  1:392562‑M2/150‑78 (MQ=255)                                                                            gATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttca                                                                                           <  2:182195‑M2/130‑60 (MQ=255)                                                                            gATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttca                                                                                           >  1:182195‑M2/1‑71 (MQ=255)                                                                              tAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTg                                                                                                           <  1:248909/112‑1 (MQ=255)                                                                              tAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTg                                                                                                           >  2:248909/1‑112 (MQ=255)                                                                                   ccGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAgatg                                                                >  1:215875/1‑150 (MQ=255)                                                                                     gCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAgatgat                                                              >  1:130850/1‑150 (MQ=255)                                                                                                ccGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGgatga                                                   >  1:221836/1‑150 (MQ=255)                                                                                                    cAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCCACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGa                                               <  1:316918/150‑1 (MQ=255)                                                                                                     aaTTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGa                                                         <  2:336077/139‑1 (MQ=255)                                                                                                     aaTTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGa                                                         >  1:336077/1‑139 (MQ=255)                                                                                                                     cTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAAGgcgc                              <  2:221836/150‑1 (MQ=255)                                                                                                                          aGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGAtt                         <  2:215875/150‑1 (MQ=255)                                                                                                                          aGCCTGGGACTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGAtt                         <  1:60135/150‑1 (MQ=255)                                                                                                                             cTGGGGCTTCTGGTTAGCCCTCTCGACCAGCAAGGCCGCCCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGcc                      <  2:295753/150‑1 (MQ=255)                                                                                                                                      ctgTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCAccagc                                                                      <  1:391412/93‑1 (MQ=255)                                                                                                                                      ctgTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCAccagc                                                                      >  2:391412/1‑93 (MQ=255)                                                                                                                                       tgtgCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatctccccttgcccatcgcccacggcctgcaggttcggccggtacatcgattcgacctgcggcggcggcacgcg            >  2:392562‑M2/1‑12 (MQ=255)                                                                                                                                            aGCGCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGCGGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATc       >  2:121343/1‑150 (MQ=255)                                                                                                                                               ccTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatctccccttgcccatcgcccacggcctgcaggttcggc                                               >  2:206423‑M2/1‑4 (MQ=255)                                                                                                                                               ccTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatctccccttgcccatcgcccacggcctgcaggttcggc                                               <  1:206423‑M2/107‑104 (MQ=255)                                                                                                                                               ccTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgg                                                                                                             >  2:22747‑M2/1‑4 (MQ=255)                                                                                                                                               ccTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgg                                                                                                             <  1:22747‑M2/45‑42 (MQ=255)                                                                                                                                               ccTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAgg    >  2:131199/1‑150 (MQ=255)                                                                                                                                                 tGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAGGcc  <  1:368666/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGCAAGGGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCACCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAGGCC  >  NC_002947/668008‑668301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.