New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4990792 | 22 (1.360) | 4 (0.260) | 4/244 | NT | 15.7% | coding (388/1242 nt) | PP_4399 | glutamine synthetase |
? | NC_002947 | = 4990803 | 22 (1.430) | coding (377/1242 nt) | PP_4399 | glutamine synthetase |
GTTGATCTCGAACTGGCTGACACCCATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCGGGCTATCACGGCCTTCAGCTGGCCCCGTGTGGA > NC_002947/4990655‑4990951 | gTTGATCTCGAACTGGCTGACACCCATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATCGCCCAGCTCGCGGCg < 1:272756‑M2/150‑2 (MQ=255) ctcGAACTGGCTGACACCCATTTCGTGCATGAAGGCGTAACGTGGCAGGTCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATc < 2:272756/150‑1 (MQ=255) cTGGCTGACACCCATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCAATTTCTCCAGCTCGCGGCGGCCATCGCTGcc < 1:303666/150‑1 (MQ=255) ccATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCa > 1:52903/1‑150 (MQ=255) tttCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGACATCGCTGCCTACAGGCGGCAGGa > 2:214118/1‑150 (MQ=255) gTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACgg > 2:260367/1‑150 (MQ=255) tGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTtgct > 2:239479/1‑150 (MQ=255) gAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTtgctg > 1:247069/1‑150 (MQ=255) ggggtCAGGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACGTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCgg < 1:137588/147‑1 (MQ=255) aGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTgggg < 1:239479/150‑1 (MQ=255) gAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAg > 1:389854/1‑110 (MQ=255) gAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAg < 2:389854/110‑1 (MQ=255) gcgcGGCCATGCAGTGGTACACCTCCTTGAAGGACGGGCGCAGGCCGGTGTTGGAACTGACACTGAACGCCGAATGGGCCAGCTCGCGGCGGCCAGCGCTGGCTACAGGCGGCAGGAACGGTTGCTTCGGGTCGGTGTTGGGGGCAAAGa < 2:187934/150‑1 (MQ=255) gcgcGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGa < 1:367607/150‑1 (MQ=255) tACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCg > 2:384852/1‑150 (MQ=255) gaagctTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTg > 1:349765/5‑150 (MQ=255) tcctTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGcc < 1:260367/150‑1 (MQ=255) aaCGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGgc < 1:384852/150‑1 (MQ=255) aaCGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGgc < 1:214118/150‑1 (MQ=255) ggCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCa < 2:399261/150‑1 (MQ=255) acacTGAACGCCGAATGGCCCAGCTCGCGGCggccattcggcgttcagtgtcagttccaacaacggcctgcgcccgtt < 2:284072‑M2/78‑48 (MQ=255) acacTGAACGCCGAATGGCCCAGCTCGCGGCggccattcggcgttcagtgtcagttccaacaacggcctgcgcccgtt > 1:284072‑M2/1‑31 (MQ=255) acTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCggg < 2:234480/146‑1 (MQ=255) acTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCggg > 1:234480/1‑146 (MQ=255) aaCGCCGAATGGCCGAGCTCGCGGCGGCCATCGCTGCTTACAGGCGGCAGCAACGGTTGCTGCGGGTCGGTGTCGGGGGCAAAGACGAAGCACTCCCGCTCGGTTGCCACTCCCGGTGGCAGGCCCGGTGCCGCATAGCGGGCTATCACg < 2:24162/150‑1 (MQ=255) gAATGGCCCAGCTCGCGGCggccattcggcgttcagtgtcagttccaacaacggcctgcgcccgttcttcaaggaggtgtaccactgcatgg > 2:157464‑M2/1‑19 (MQ=255) gAATGGCCCAGCTCGCGGCggccattcggcgttcagtgtcagttccaacaacggcctgcgcccgttcttcaaggaggtgtaccactgcatgg < 1:157464‑M2/92‑74 (MQ=255) ggCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCGGGCTATCACGGCCTTCAGCt < 1:304313/150‑1 (MQ=255) gcggcCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCGGGCTATCACGGCCTTCAGCTGGCCCCGTGTGGa < 2:247069/150‑1 (MQ=255) | GTTGATCTCGAACTGGCTGACACCCATTTCGTGCATGAAGGTGTCACGTGGCAGGCCGAGCGCGGCCATGCAGTGGTACACCTCCTTGAAGAACGGGCGCAGGCCGTTGTTGGAACTGACACTGAACGCCGAATGGCCCAGCTCGCGGCGGCCATCGCTGCCTACAGGCGGCAGGAACGGTTGCTGCGGGTCGGTGTTGGGGGCAAAGACGAAGAACTCCAGCTCGGTTGCCACTACCGGCGCCAGGCCCAGTGCCGCATAGCGGGCTATCACGGCCTTCAGCTGGCCCCGTGTGGA > NC_002947/4990655‑4990951 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |