Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,097,674 | G→T | 22.2% | L16M (CTG→ATG) | PP_3605 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,097,674 | 0 | G | T | 22.2% | 33.6 / 4.8 | 18 | L16M (CTG→ATG) | PP_3605 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (8/6); new base T (2/2); total (10/8) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.69e-01 |
GCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATGGGCCTTGGC > NC_002947/4097564‑4097821 | gCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCGAGTGCATCAGCGCGACGACTGTCGAAGGt > 1:335220/1‑150 (MQ=255) ccAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGATAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATgg > 2:432619/1‑150 (MQ=255) ccAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGATAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATgg < 1:432619/150‑1 (MQ=255) ccAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATgg > 2:389330/1‑150 (MQ=255) aaaGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCa > 1:193659/1‑150 (MQ=255) cGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCGATGAAATCAGGGGGCGGATCa > 2:94059/1‑150 (MQ=255) cGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCa < 2:193659/150‑1 (MQ=255) tAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAgg < 1:389330/150‑1 (MQ=255) ggTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAg < 2:159922/150‑1 (MQ=255) gcTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGAACAGGCAGTCAGCa > 1:91475/1‑150 (MQ=255) cTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCAAGCAGCGTGGCAAGCAAAAAAAAAAGACTGGCGTCGGACCTGTCCTGGGCAATGCTGGGGTTAGGGCAGTTAAATCAGGGGGCGGATCAGGCAGTCAGCAc < 2:384652/150‑1 (MQ=255) gAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTcc > 1:379101/1‑150 (MQ=255) aCAAGGCCATCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATg > 1:6012/1‑148 (MQ=255) aCAAGGCCATCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATg > 1:6006/1‑148 (MQ=255) aCAAGGCCATCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATg < 2:6006/148‑1 (MQ=255) aCAAGGCCATCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATg < 2:6012/148‑1 (MQ=255) cAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATGGGc < 2:329192/150‑1 (MQ=255) aGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATGGGCCt > 2:391815/1‑150 (MQ=255) cagcagGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATGGGCCTTGgc > 2:162151/1‑150 (MQ=255) | GCGAATGCCCAGCCGCGTCTCTAAAGCACTCAGGCGTTTCGACAGCACCGTAGGGTGGCGCTCCAGTTGCCGCCCGGCGGCAGCAAACGAGCCCTGCTCATACAAGGCCAGCAGGGTGGCAAGTTCATCAGCGCGACGACTGTCGAAGGTATCCATGGCAAGGCTCGGCTCAGGGCAGTGAAATCAGGGGGCGGATCAGGCAGTCAGCACCAGCGCGCCCTCCGACCGCCCTTGCTCCAGGCATTCATGGGCCTTGGC > NC_002947/4097564‑4097821 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |