Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,567,230 | A→T | 12.9% | L103M (TTG→ATG) ‡ | mutL ← | DNA mismatch repair protein MutL |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,567,230 | 0 | A | T | 12.9% | 82.8 / 4.3 | 31 | L103M (TTG→ATG) ‡ | mutL | DNA mismatch repair protein MutL |
Reads supporting (aligned to +/- strand): ref base A (15/12); new base T (2/2); total (17/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
TTCCACCGAGGTACCGACCGGGTGCGCCGCCGGCTGCACCCGCGGCGTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGAC > NC_002947/5567087‑5567374 | ttCCACCGAGGTACCGACCGGGTGCGCCGCCGGCTGCACCCGCGGCGTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTc < 1:280885/150‑1 (MQ=255) ctgCTGCACCCGCGGCGTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTc < 1:377632/148‑1 (MQ=255) ccGCGGCGTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGGGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTc < 1:332154/150‑1 (MQ=255) ccGCGGCGTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTc > 1:355255/1‑150 (MQ=255) tcggcgTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCa < 2:49430/149‑1 (MQ=255) gcggcgTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGACACAATACCCCCTCTCGGGCTTcaa > 2:248319/1‑148 (MQ=255) gcgTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCt > 1:378579/1‑150 (MQ=255) tCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCTTGGCCTCgatc > 2:300742/1‑104 (MQ=255) tCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCTTGGCCTCgatc < 1:300742/107‑4 (MQ=255) ccTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGTTACGCGATGTCAGGGTCAGTCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGTCTCAATACCCCTTCTATGTCTTCCAGCGCGCGGATCTTGCtt < 2:313886/150‑2 (MQ=255) ttCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATAc > 2:139015/1‑114 (MQ=255) ttCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATAc < 1:139015/114‑1 (MQ=255) tACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCg > 2:136701/1‑150 (MQ=255) tACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCg > 1:345332/1‑150 (MQ=255) ggCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCtg < 2:214471/130‑1 (MQ=255) ggCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCtg > 1:214471/1‑130 (MQ=255) actggcGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAg > 1:413295/1‑135 (MQ=255) actggcGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAg < 2:413295/135‑1 (MQ=255) cGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCgg < 2:345332/150‑1 (MQ=255) gcgAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGaaa > 1:243432/1‑150 (MQ=255) gtcagggtcaggCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCg > 1:268462/1‑150 (MQ=255) tcagggtcaggCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGc > 2:443483/1‑150 (MQ=255) cagggtcaggCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCt < 1:17937/150‑1 (MQ=255) ggtcaggCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGcc > 2:143757/1‑150 (MQ=255) gcCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTTTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGc > 2:273276/1‑150 (MQ=255) gcCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCTGCAGAAATGCCGCTGCCATCATCCCGc > 2:208988/1‑150 (MQ=255) gAACTGCACGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTc > 2:250723/1‑150 (MQ=255) aaCTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTca < 2:268462/150‑1 (MQ=255) tggcGAGGCCTTGGCCTCGCCACGTAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAg > 2:250589/4‑105 (MQ=255) tggcGAGGCCTTGGCCTCGCCACGTAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAg < 1:250589/102‑1 (MQ=255) ggCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGAc < 2:378579/150‑1 (MQ=255) | TTCCACCGAGGTACCGACCGGGTGCGCCGCCGGCTGCACCCGCGGCGTCATGTCGCGGCCTTCGGTTTCTACTTGCCAGGCCTCACTGGCACTGGCGGTACGCGAGGTCAGGGTCAGGCGCGCCACCGAACTGATCGAGGCCAAGGCCTCGCCACGGAAGCCCAGGCTCAATACCCCTTCTAGGTCTTCCAGCTCGCGGATCTTGCTGGTGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGAC > NC_002947/5567087‑5567374 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |