| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,920,622 | G→C | 17.4% | V384V (GTG→GTC) | PP_5190 → | type II secretion system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,920,622 | 0 | G | C | 17.4% | 50.0 / 6.1 | 23 | V384V (GTG→GTC) | PP_5190 | type II secretion system protein |
| Reads supporting (aligned to +/- strand): ref base G (8/11); new base C (2/2); total (10/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.46e-01 | |||||||||||
GGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCCGCGACCGCGAAACCGCTCTGGTGGCGGTGCAGGCAGCGCTGACCGGGCACCTGGTGCTATCGA > NC_002947/5920473‑5920770 | ggCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTg < 2:225838/150‑1 (MQ=255) tcatcCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGc < 1:281788/150‑1 (MQ=255) TCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCGAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTgg < 1:70492‑M1/150‑1 (MQ=255) ccccACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTCCATCGCGGGCTTCACCTgtg < 2:228915/150‑3 (MQ=255) acCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCaa < 1:12101/150‑1 (MQ=255) aaCTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAggg < 1:2100/126‑1 (MQ=255) aaCTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAggg > 2:2100/1‑126 (MQ=255) aCTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGAcat < 2:70492/150‑1 (MQ=255) tgctgGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGAcatca < 2:249222/150‑1 (MQ=255) tgctgGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAAAGCGTTCAGGGCCATGCTGCGCCAAGACCCCGAcatca < 1:217097/150‑1 (MQ=255) cacaccacaGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGAcatcatca > 2:68537/1‑146 (MQ=255) cacaccacaGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGAcatcatca < 1:68537/146‑1 (MQ=255) cacaccacaGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGCGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGAGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGAt > 1:99662/1‑150 (MQ=255) accacaGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCgg > 2:290433/1‑150 (MQ=255) aCCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTCCAGCGCGGGCTGCACCt < 1:289851/79‑1 (MQ=37) aCCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTCCAGCGCGGGCTGCACCt > 2:289851/1‑79 (MQ=37) ccTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATccgcga > 1:251165/1‑150 (MQ=255) cATCGAAGACCCGATCGAGCGCCGGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCGGCGACCGCGAAAc > 1:221550/1‑150 (MQ=255) gATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATcc < 1:288096/125‑1 (MQ=255) gATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCCGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATcc > 2:288096/1‑125 (MQ=255) gTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCCGCGACCGCGAAACCGCTCTGGTGGCGGTGCAGGCAGCGCTGACTGGGCACCTGGt < 2:75230/150‑1 (MQ=255) cAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCCGCGACCGCGAAACCGCTCTGGTGGCGGTGCAGGCAGCGCTGACCGGGCACCTGGTGCTa < 2:251165/150‑1 (MQ=255) cAGGTCCAGCGCGGGCTGCACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCCGCGACCGCGAAACCGCTCTGGTGGCGGTGCAGGCAGCGCTGACCGGGCACCTGGTGCTa > 1:227504/1‑150 (MQ=255) tGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCCGCGACCCCGAAACCGCTCTGGTGGCGGTGCAGGCAGCGCTGACCGGGCACCTGGTGCTATCGa > 1:359682/1‑150 (MQ=255) | GGCATCATCCTGGTCACCGGCCCCACCGGCTCCGGCAAGACCAGCACGCTGTACACCAGCCTCAAACTGCTGGCCACACCACAGGTCAACCTGTGCACCATCGAAGACCCGATCGAGCGCCTGGAGCCAGCCTTCAACCAGTTGCAGGTGCAGCCCGCGCTGGACCTGGGGTTTGCCAACGCGGTCAGGGCCATGCTGCGCCAAGACCCCGACATCATCATGATCGGCGAAATCCGCGACCGCGAAACCGCTCTGGTGGCGGTGCAGGCAGCGCTGACCGGGCACCTGGTGCTATCGA > NC_002947/5920473‑5920770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |