Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 399,532 | C→T | 12.9% | V19M (GTG→ATG) ‡ | PP_0332 ← | acyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 399,532 | 0 | C | T | 12.9% | 76.0 / 3.1 | 31 | V19M (GTG→ATG) ‡ | PP_0332 | acyltransferase |
Reads supporting (aligned to +/- strand): ref base C (15/12); new base T (2/2); total (17/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 |
TAGGGATGCACAGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGACGGCGGGGACAAA > NC_002947/399385‑399679 | gtgggATGCACAGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACgg < 2:318413/148‑1 (MQ=255) cacaGGGCGAAGATGGCTTTGTCGATCTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCGTGGTATTGatc < 1:279669/150‑3 (MQ=255) ggCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCGTGGTATTGatct > 1:147316/1‑143 (MQ=255) ggCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCGTGGTATTGatct < 2:147316/146‑4 (MQ=255) tgttcagttCCGACCCGGTTTCGCCCACCCACATCACCGCCCAGGGTGCCTAGTCGCGGCCCCGGCCTGGCAACACCAGCTTGAGCTGTGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTga < 1:25860/143‑1 (MQ=255) aGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAggg < 1:196447/126‑1 (MQ=255) aGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAggg > 2:196447/1‑126 (MQ=255) tttCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGc > 2:350278/1‑150 (MQ=255) ccacATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATaaa > 2:370783/1‑150 (MQ=255) tCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAag < 2:370473/146‑1 (MQ=255) tCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAag > 1:370473/1‑146 (MQ=255) cACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCttgttg > 1:356214/1‑150 (MQ=255) acgacgCGTAGTCGCGGCCCCGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACGACGGTATTGAGCAGCAGCAGGGTGGTAGTTAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTtgttgt < 2:214463/150‑1 (MQ=255) gTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGAt < 2:356214/150‑1 (MQ=255) ggCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGtt > 1:109781/1‑150 (MQ=255) ggCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCg > 1:261979/1‑90 (MQ=255) ggCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCg < 2:261979/90‑1 (MQ=255) aaCACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCa > 1:155635/1‑150 (MQ=255) acacCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAg < 2:155635/150‑1 (MQ=255) cAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCg > 1:103429/1‑150 (MQ=255) tGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGc < 1:350278/150‑1 (MQ=255) aGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACg > 1:95372/1‑150 (MQ=255) aGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGc < 2:148386/127‑1 (MQ=255) aGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGc > 1:148386/1‑127 (MQ=255) gACCAGCAGCGGGTAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGt > 1:381545/1‑150 (MQ=255) cagcagCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTtgtg < 2:144499/96‑1 (MQ=255) cagcagCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTtgtg > 1:144499/1‑96 (MQ=255) ctCAATACCGTGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGAcggcg > 1:331869/2‑150 (MQ=255) aTCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTtgttgt < 2:97702/82‑1 (MQ=255) aTCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTtgttgt > 1:97702/1‑82 (MQ=255) cACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGACGGCGGGGACaaa > 1:60061/1‑150 (MQ=255) | TAGGGATGCACAGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGACGGCGGGGACAAA > NC_002947/399385‑399679 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |