Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 768,071 | C→T | 44.4% | A49V (GCC→GTC) | mmuP → | S‑methyl‑L‑methionine transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 768,071 | 0 | C | T | 44.4% | ‑3.0 / 6.1 | 9 | A49V (GCC→GTC) | mmuP | S‑methyl‑L‑methionine transporter |
Reads supporting (aligned to +/- strand): ref base C (3/2); new base T (2/2); total (5/4) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AAATGCCTCGGCGCATACCTTCAAGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCATGATGTGCCTGGGCGAGCTGGCGGTACACATGCCGGAAGTCGGCTCGTTCAGCAGTTACGCCACGCG > NC_002947/767952‑768197 | aaaTGCCTCGGCGCATACCTTCAAGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGTCGGCCCGTTGGGCGCGGTCATCGCTTACAt > 2:265499/1‑150 (MQ=255) aaaTGCCTCGGCGCATACCTTCAAGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGTCGGCCCGTTGGGCGCGGTCATCGCTTACAt > 2:265606/1‑150 (MQ=255) aaGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGTCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTAc < 1:265499/150‑1 (MQ=255) aaGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGTCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTAc < 1:265606/150‑1 (MQ=255) tatatGCAAACCCGCCACATCGTCATGCTTGCGCTGGGCGGAGTGATAGGCACCGGCCTATTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTGACATACTCGGCGCCATCATGGTGTACCTGGTc < 1:176750/149‑1 (MQ=255) tGCAAACCCGCCACATCGTCGTGCCAGCGCTTGGCAGATTGATATTCACCGGGCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCatga < 2:382904/150‑1 (MQ=255) tGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTAACTGGTCATGATGTGCCTGGGCGAGCTGGCGGTac > 1:45791/1‑150 (MQ=255) gCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCATGATGTGCCTGGGCGAGCTGGCGGTACACATGCCGGAAGTCGGCTCGTTcagca > 2:72978/1‑150 (MQ=255) gTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCATGATGTGCCTGGGCGAGCTGGCGGTACACATGCCGGAAGTCGGCTCGTTCAGCAGTTACGCCAcgcg > 1:292138/1‑150 (MQ=255) | AAATGCCTCGGCGCATACCTTCAAGCAGGATATGCAAACCCGCCACATCGTCATGCTGGCGCTGGGCGGAGTGATAGGCACCGGCCTGTTTCTCACGTCGGGCTACACCGTTAACCAGGCCGGCCCGTTGGGCGCGGTCATCGCTTACATACTCGGCGCAATCATGGTGTACCTGGTCATGATGTGCCTGGGCGAGCTGGCGGTACACATGCCGGAAGTCGGCTCGTTCAGCAGTTACGCCACGCG > NC_002947/767952‑768197 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |