Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,130,341 | G→C | 23.5% | H101D (CAC→GAC) | PP_0990 ← | DoxX family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,130,341 | 0 | G | C | 23.5% | 28.1 / 4.1 | 17 | H101D (CAC→GAC) | PP_0990 | DoxX family protein |
Reads supporting (aligned to +/- strand): ref base G (8/5); new base C (2/2); total (10/7) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
AAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCGGGTCATCAGCCCGAGCACCAGCAATAGCGGGAACAAGTGCTCAGCGTAGGCGGCCAGGTGCGCTGCAAGCCA > NC_002947/1130206‑1130488 | aaaaCGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGAAGCACTGGTGGAAAGGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCATGAGCCCTGCCCAGGGCAGGTGGGTGGGCCACGCAt > 2:238658/1‑150 (MQ=255) tggtgCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGaa < 2:249811/150‑1 (MQ=255) ggtgCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCAGAAGTCGGGGTAGACGAac < 1:238658/150‑1 (MQ=255) ccTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACtt > 1:64157/1‑150 (MQ=255) gAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCCGATGATCCAGCGAAAACGCGCCGGCG‑CCCCCGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGACAGGTGGCTGGGCCACTCCTGGGGGTAGCCGCACCCTTCCATCTCCAAc < 2:129898/150‑1 (MQ=255) aaTGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTCGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGcc > 2:336208/1‑150 (MQ=255) aaTGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTCGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGcc > 2:335995/1‑150 (MQ=255) gTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTCGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCa < 1:335995/150‑1 (MQ=255) gTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTCGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCa < 1:336208/150‑1 (MQ=255) tttCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAg > 1:287192/1‑150 (MQ=255) cAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCGGGTCATCAGccc < 1:95965/150‑1 (MQ=255) ccgttgcgcgCCGGCGTACTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCgg > 2:2280/7‑137 (MQ=255) ccgttgcgcgCCGGCGTACTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCgg < 1:2280/131‑1 (MQ=255) aaaaCGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCGGGTCATCAGCCCGAGCa > 1:25397/1‑150 (MQ=255) ccGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCGGGTCATCAGCCCGAGCACCAGCAAt > 1:13547/1‑150 (MQ=255) cccTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCGGGTCATCAGCCCGAGCACCAGCAATAGCGGGAACAAGTGCTCAGCGTAGGCGGCCAg > 1:251689/1‑150 (MQ=255) ccTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACAAACCTCATGCCCAGCATTTCCAGCGCCGATAGCCGGGTCATCAGCCCGAGCACCAGCAATAGCGGGAACAAGTGCTCAGCGTAGGCGGCCAgg > 1:166917/1‑150 (MQ=255) gtgggtggGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCGGGTCATCAGCCCGAGCACCAGCAATAGCGGGAACAAGTGCTCAGCGTAGGCGGCCAGGTGCGCTGCAAGCCa > 1:85367/1‑150 (MQ=255) | AAAACGATACATGTGGTGCCTGGACTGGCGAGGTGCCAATGGCCTTCGGTCATCTCACTTTCAGCAGATGATCCAGCGAAAACGCGCCGGCG‑CCTCGGGCAACCAGGAGCAGCAAGAGCCCTGCCCAGGTCAGGTGGGTGGGCCACGCATCGGGGTAGACGAACACTTCGATCACCAACGTCATGCCCAGCAGTGCCAGCGCCGATAGCCGGGTCATCAGCCCGAGCACCAGCAATAGCGGGAACAAGTGCTCAGCGTAGGCGGCCAGGTGCGCTGCAAGCCA > NC_002947/1130206‑1130488 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |