Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,280,512 | A→G | 26.6% | intergenic (‑511/‑96) | PP_1117 ← / → PP_5742 | hypothetical protein/membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,280,512 | 0 | A | G | 26.6% | 19.0 / 4.2 | 15 | intergenic (‑511/‑96) | PP_1117/PP_5742 | hypothetical protein/membrane protein |
Reads supporting (aligned to +/- strand): ref base A (4/7); new base G (2/2); total (6/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TAGAAAACATTATCGCATCTCATTCGCATTCTGTAAATGAGTTTCCTGACTTTTAGTTGTTCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTGCTAGGCTAGCTCTTTTTGTAAGGAGTCGTTTGGTGAACAAATTCTGCAAGTGGG > NC_002947/1280383‑1280629 | tAGAAAACATTATCGCATCTCATTCGCATTCTGTAAATGAGTTTCCTGACTTTTAGTTGTTCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTa < 1:20782/150‑1 (MQ=255) gCATCTCATTCGCATTCTGTAAATGAGTTTCCTGACTTTTAGTTGTTCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCt > 2:437012/1‑150 (MQ=255) cATCTCATTCGCATTCTGTAAATGAGTTTCCTGACTTTTAGTTGTTCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTGGTTAAATTGGTGA‑TTTTTAGGATTATGGCTTCtat > 1:223026/1‑150 (MQ=255) ttCCTGACTTTTAGTTGTTCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGA‑TTTTTAGGATTATGGCTTCTCTATATGTTCTAATTTGTTGTAGAATCtt < 2:98416/150‑2 (MQ=255) tGACTTTTAGTTGTTCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTgcta < 2:363371/150‑1 (MQ=255) cTTTTAGTTGTTCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTGGTTAAATTGGTGA‑TTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTgctaggct < 2:223026/150‑1 (MQ=255) ttCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTGCTAGGCTAGCTCtttt > 1:382486/1‑150 (MQ=255) tttCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTGCTAGGCTAGCTCTTTTTGTAAGGAGTCGt < 2:382486/150‑1 (MQ=255) tCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTGCTAGGCTAGCTCTTTTTGTAAGGAGTCGttt < 1:82867/150‑1 (MQ=255) cTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTCCTTTCTTGTAGAATCTGCTAGGCTAGCTCTTTTTGTAAGGAGTCGTTTg < 1:437012/150‑1 (MQ=255) gagaAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTGCTAGGCTAGCTCTTTTTGTAAGGAGTCGTTTGGTGAACAAATTCTGCAAGTggg > 2:251345/1‑150 (MQ=255) atttattAAGCAAGTCAGTGGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATc < 1:124/81‑1 (MQ=255) atttattAAGCAAGTCAGTGGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATc > 2:124/1‑81 (MQ=255) attaAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTGCTAGGCTAGCTCTTTTTGTAAGGAGTCGTTTg < 1:5543/111‑1 (MQ=255) attaAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTGCTAGGCTAGCTCTTTTTGTAAGGAGTCGTTTg > 2:5543/1‑111 (MQ=255) | TAGAAAACATTATCGCATCTCATTCGCATTCTGTAAATGAGTTTCCTGACTTTTAGTTGTTCTTTGAGAGCATTTCTTATGCGAAGTATGGGGTGTGGAGAAGCTTCGCTATTTATTAAGCAAGTCAGTAGTTAAATTGGTGATTTTTTAGGATTATGGCTTCTATATATGTTCTAATTTCTTGTAGAATCTGCTAGGCTAGCTCTTTTTGTAAGGAGTCGTTTGGTGAACAAATTCTGCAAGTGGG > NC_002947/1280383‑1280629 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |