| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,366,118 | G→T | 17.4% | S196S (TCC→TCA) | PP_1191 ← | S4 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,366,118 | 0 | G | T | 17.4% | 54.5 / 3.5 | 23 | S196S (TCC→TCA) | PP_1191 | S4 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (11/8); new base T (2/2); total (13/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATTCCAGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCAGGCGTTCCAGCGCCTGGGGGGTGGTTTCGCCGCGC > NC_002947/1365975‑1366265 | aTTCCAGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACCCACCACCCAGGCGAATGCGTCGCATGCTTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGatata > 1:107121/1‑149 (MQ=255) ggcgTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGtt < 2:113356/150‑1 (MQ=255) aGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGG‑TTTTCAACACCATGCGCAg < 2:173559/150‑1 (MQ=255) ttGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCa > 2:79974/1‑150 (MQ=255) cccAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCtg < 2:15297/150‑1 (MQ=255) ccAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGgtgt < 1:94364/131‑1 (MQ=255) ccAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGgtgt > 2:94364/1‑131 (MQ=255) gCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCtggccttggcct > 2:369045/1‑150 (MQ=255) cTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTggccttggcctt < 1:369045/150‑1 (MQ=255) accCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCAtt > 2:435742/1‑150 (MQ=255) aGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCACTTGGCCGTGGCCTTGGGCAACTCGCGGTCATTgcgc > 2:369526/1‑150 (MQ=255) aaTGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCAGTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGc < 1:369526/150‑1 (MQ=255) tGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCa > 1:244794/1‑150 (MQ=255) cTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGTCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCAGGc > 1:357666/1‑150 (MQ=255) cAGGCGCAGGTAGGCGCATAGCTCTGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGtt < 1:130268/78‑1 (MQ=255) cAGGCGCAGGTAGGCGCATAGCTCTGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGtt > 2:130268/1‑78 (MQ=255) cAGGCGCAGGTAGGCGCATAGCTCTGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGtt > 2:130444/1‑78 (MQ=255) cAGGCGCAGGTAGGCGCATAGCTCTGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGtt < 1:130444/78‑1 (MQ=255) aGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCAGGCGTTCCAGCGCCTggggg < 1:326249/150‑1 (MQ=255) ggTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCAGGCGTTCCAg > 2:108684/1‑139 (MQ=255) ggTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCAGGCGTTCCAg < 1:108684/139‑1 (MQ=255) gcATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCAGGCGTTCCAGCGCCTGGGGGGTGGTTTc > 1:275783/1‑150 (MQ=255) tCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCAGGCGTTCCAGCGCCTGGGGGGTGGTTTCGCCgcgc > 1:162418/1‑150 (MQ=255) ggAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCtggcctt < 2:220412/69‑1 (MQ=255) ggAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCtggcctt > 1:220412/1‑69 (MQ=255) | ATTCCAGCGCGGCGTATTGCTTAGAAACGTTCGGAGGTAGCCAGGTAACGCCATTGGCCCAAGGGCAGCTTGCCCATCGACACACCACCCAGGCGAATGCGTCGCATGCCTAAAAGCTCCAGGCGCAGGTAGGCGCATAGCTCGGAAATCTGTCCTGGTTGTGGGTTTTTCAACACCATGCGCAGGTGTGTCTCGTTCTGCCAGCTGGCCTTGGCCTTGGGCAACTCGCGGTCATTGCGCATGGCCCCACGCGCCAGGCGTTCCAGCGCCTGGGGGGTGGTTTCGCCGCGC > NC_002947/1365975‑1366265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |