Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,471,405 | A→C | 13.8% | S477A (TCG→GCG) | alg8 ← | glycosyltransferase Alg8 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,471,405 | 0 | A | C | 13.8% | 53.4 / 5.9 | 29 | S477A (TCG→GCG) | alg8 | glycosyltransferase Alg8 |
Reads supporting (aligned to +/- strand): ref base A (12/13); new base C (2/2); total (14/15) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.55e-01 |
GGCTTCGGACTCATGCACGACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTTCATCAGCGCGCCGATGATCTGGTTGTAATAGAGAATCA > NC_002947/1471261‑1471548 | ggCTTCGGACTCATGCACGACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGAcc > 2:8194/1‑150 (MQ=255) cTTCGGACTCATGCACGACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAg < 2:265183/150‑1 (MQ=255) cTTCGGACTCATGCACGACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTGCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAg < 1:167297/150‑1 (MQ=255) aCTCATGCACGACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACCGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGCACCAGGTGTTg < 2:6660/150‑1 (MQ=255) aTGCACGACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCTCGCGGACCatgacc < 2:14197/144‑6 (MQ=255) aTGCACGACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCTCGCGGACCatgacc > 1:14197/1‑139 (MQ=255) gACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCAttgtt > 1:296957/1‑150 (MQ=255) ttGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGACAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGTAAGCTGGCGAGGTCACGCTTGAGGGCAGTgg < 1:157127/150‑1 (MQ=255) tGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCACCGTGGCGCCTGGTTCGCGAGGCCCCGGTGTTGAACCACTGTTGAAGGCTGGCGAGGTCACGCTTGAGGGCAGTggg < 1:8194/150‑1 (MQ=255) tGTTAGATCCGATCCGTGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGACAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGAcg > 2:100464/1‑150 (MQ=255) tGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGAcg > 2:227315/1‑150 (MQ=255) ttAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAg > 2:295854/1‑92 (MQ=255) ttAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAg < 1:295854/92‑1 (MQ=255) gatccgGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCAttg > 1:372299/1‑98 (MQ=255) gatccgGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCAttg < 2:372299/98‑1 (MQ=255) gggTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTACACGACTGCtt > 2:278143/1‑150 (MQ=255) gACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTc < 1:420649/96‑1 (MQ=255) gACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTc > 2:420649/1‑96 (MQ=255) gACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGgaagaa < 1:306143/150‑1 (MQ=255) tGAACAGCACAGCAACGAAGATGCTGACAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGt < 1:100464/150‑1 (MQ=255) agcaACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTtcat > 2:20643/1‑150 (MQ=255) tGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTTCATCAGCGCGCCga < 2:296957/150‑1 (MQ=255) ccGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTTCATCAGCGCGCCGATGATCTGGt > 2:213303/1‑150 (MQ=255) agaAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTTCATCAgcgcg > 2:152041/1‑134 (MQ=255) agaAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTTCATCAgcgcg < 1:152041/134‑1 (MQ=255) tCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTTCATCAGCGCGCCGATGATCTGGTTGTAATaga < 2:326378/150‑1 (MQ=255) acctGGTCCTCGCGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTCGTCGAGGCGGAAGAACACGTAGATCTtc > 2:246262/4‑119 (MQ=255) acctGGTCCTCGCGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTCGTCGAGGCGGAAGAACACGTAGATCTtc < 1:246262/116‑1 (MQ=255) tCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTTCATCAGCGCGCCGATGATCTGGTTGTAATAGAGAATCa > 1:216406/1‑150 (MQ=255) | GGCTTCGGACTCATGCACGACATTGACGTTCACGGCGGTATTCATGGTGGTTTGTTCCTGTTAGATCCGATCCGGGTTGGGCTCACACGACCATGAACAGCACAGCAACGAAGATGCTGGCAGCCGAGAAGGTCATGGTCCGCGAGGACCAGGTGTTGAACCATTGTTGAAAGCTGGCGAGGTCACGCTTGAGGGCAGTGGGCTGACGCGTCCACGACTGCTTGTCGAGGCGGAAGAACACGTAGATCTTCATCAGCGCGCCGATGATCTGGTTGTAATAGAGAATCA > NC_002947/1471261‑1471548 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |