Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,031,415 | T→A | 20.0% | intergenic (+45/+30) | PP_1806 → / ← kdsA‑II | arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,031,415 | 0 | T | A | 20.0% | 39.7 / 6.9 | 20 | intergenic (+45/+30) | PP_1806/kdsA‑II | arabinose 5‑phosphate isomerase/2‑dehydro‑3‑deoxyphosphooctonate aldolase |
Reads supporting (aligned to +/- strand): ref base T (7/9); new base A (2/2); total (9/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.70e-01 |
GCTTACATGCTGGAGAACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACTTGGCCTGATC > NC_002947/2031269‑2031564 | gCTTACATGCTGGAGAACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCACCCGCTTCTTGTCCa > 1:103793/1‑150 (MQ=255) gCTGGAGAACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGc < 1:3467/150‑1 (MQ=255) gaACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACt > 1:85581/1‑150 (MQ=255) ccGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCt < 2:70651/136‑1 (MQ=255) ccGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCt > 1:70651/1‑136 (MQ=255) gCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAACCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGAt < 2:103793/150‑1 (MQ=255) cTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTGGACAAGAAGCgg > 2:291882/1‑128 (MQ=255) cTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTGGACAAGAAGCgg < 1:291882/128‑1 (MQ=255) tGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAgg < 2:85581/150‑1 (MQ=255) tGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAgg < 1:232458/150‑1 (MQ=255) gacgaTTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTAc > 2:141505/1‑121 (MQ=255) gacgaTTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTAc < 1:141505/121‑1 (MQ=255) cGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGaa < 2:110792/150‑1 (MQ=255) ggCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTGGACAAGAAGCGGCtgc < 1:286784/98‑3 (MQ=38) ggCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTGGACAAGAAGCGGCtgc > 2:286784/1‑96 (MQ=38) aCGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGAAGGGTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGTCAATAGTCAATTGCGCGAATGATTTTACCAGATCATCCAGCGCTTTGAttt > 2:39466/1‑150 (MQ=255) cAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCCGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCtt < 2:250408/150‑1 (MQ=255) ttGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAAGGTTCCAGCTTGTCCAATGGCAGTgcg > 2:67313/1‑150 (MQ=255) cAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTa > 1:238973/1‑75 (MQ=255) cAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTa < 2:238973/75‑1 (MQ=255) tCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACTTGGCCTGATc > 1:147719/1‑150 (MQ=255) | GCTTACATGCTGGAGAACAAAATCCGTGCCTTGGCGGTGGTCGACGATTGCGGGGCTATTGTTGGCGTCGTCGAGATTTTTGACGGCAATCCCGTAGCGTGAAACAGCCGGTAATTATCGTTGCCTGGGTAGGCAGCCGCTTCTTGTCCAGAAGCGGCTTTACTCACCGTCGTAGATTAGGCAATAGTCAATTGCGGGAATGATTTTACCAGATCATCCAGCGCTTTGATTTGTGCCAGGAAGGGTTCCAGCTTGTCCAATGGCAGTGCGCTCGGGCCATCACACTTGGCCTGATC > NC_002947/2031269‑2031564 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |