New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808219 =	0 (0.000)	12 (0.360)	10/208	2.4	49.0%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988991	25 (0.740)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCG  >  NC_002947/4808073‑4808353                                                                                                                                                   |                                                                                                                                       ctacgtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcg                                                                                                                                     <  2:240293‑M1/4‑1 (MQ=255)   gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggtgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagctggtttaCCcgcg                                                                                                                                   <  2:1055606‑M1/6‑1 (MQ=255)     gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccacacgaagacgtaggagcgggtttaCCCGCGaa                                                                                                                                 >  1:296040‑M1/143‑150 (MQ=255)                            tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAt                                                                                                          >  2:945173‑M1/120‑150 (MQ=255)                            tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGAt                                                                                                          <  1:722463‑M1/31‑1 (MQ=255)                                                                tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATTCTCCGGCAAACACCTCa                                                                      <  1:435826‑M1/67‑1 (MQ=255)                                                                     tcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgc                                                                                                                                    <  1:1005459‑M1/5‑1 (MQ=255)                                                                     tcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgc                                                                                                                                    >  2:1005459‑M1/79‑83 (MQ=255)                                                                              tacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtatgagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGTCAAACACCTCAAAATTCCAACGCCg                                                        <  2:511979‑M1/81‑1 (MQ=255)                                                                                                       tggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGccc                               <  1:624985‑M1/106‑1 (MQ=255)                                                                                                              ggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaaa                        <  1:1032991‑M1/113‑1 (MQ=255)                                                                                                                 gggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAAtt                     <  1:733363‑M1/116‑1 (MQ=255)                                                                                                                          cgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgccg            <  1:940282‑M1/125‑1 (MQ=255)                                                                                                                           gaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAAcgccgc           <  1:938513‑M1/126‑1 (MQ=255)                                                                                                                                aaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTccc      <  1:248551‑M1/131‑1 (MQ=255)                                                                                                                                 aacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTcccc     >  2:940282‑M1/19‑150 (MQ=255)                                                                                                                                    gtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCg  <  1:300933‑M1/135‑1 (MQ=255)                                                                                                                                          gcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCaa                 <  1:989104‑M1/120‑1 (MQ=255)                                                                                                                                          gcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCaa                 >  2:989104‑M1/10‑129 (MQ=255)                                                                                                                                                   |                                                                                                                                       GTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCG  >  NC_002947/4808073‑4808353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.