Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 43,461:1 | +A | 19.4% | intergenic (+27/+66) | PP_0040 → / ← cadA‑I | hypothetical protein/cadmium translocating P‑type ATPase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 43,461 | 1 | . | A | 19.4% | 78.9 / 19.9 | 31 | intergenic (+27/+66) | PP_0040/cadA‑I | hypothetical protein/cadmium translocating P‑type ATPase |
Reads supporting (aligned to +/- strand): ref base . (14/11); new base A (3/3); total (17/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.40e-01 |
CGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCAT > NC_002947/43317‑43594 | cGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCa < 1:448667/150‑1 (MQ=255) tGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGGCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCa > 1:373912/1‑150 (MQ=255) gAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAg > 2:250950/1‑150 (MQ=255) aGCTGCATTGGCCTGCGGCTTACGCCATGGCTCACCTGAGTGCGGACCGGTCCGGGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTcc < 1:30266/150‑1 (MQ=255) cTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCt > 1:290265/1‑150 (MQ=255) gCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGACCCGta > 2:52744/1‑125 (MQ=255) gCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGACCCGta < 1:52744/125‑1 (MQ=255) ttGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGACCCGta < 2:486163/122‑1 (MQ=255) ttGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGACCCGta > 1:486163/1‑122 (MQ=255) cTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGAc < 1:120877/112‑1 (MQ=255) cTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGAc > 2:120877/1‑112 (MQ=255) cGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAg < 2:290265/150‑1 (MQ=255) ggCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTTAGAGAAAAGTACTGGACGTGCGCTGATC‑TCGCACGACCCGTACATCTACTACAGATCATTTCCCTGCTTCGCTTCATGATTGaatc > 2:137337/1‑148 (MQ=255) cATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCAttt > 2:366096/1‑123 (MQ=255) cATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCAttt < 1:366096/123‑1 (MQ=255) tCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGAt < 1:250950/150‑1 (MQ=255) ggAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCAt < 2:377505/121‑1 (MQ=255) ggAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCAt > 1:377505/1‑121 (MQ=255) ccTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGTCCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTa < 1:475244/147‑1 (MQ=255) ccTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTa > 2:475244/1‑147 (MQ=255) cTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGt < 2:179621/134‑1 (MQ=255) cTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGt > 1:179621/1‑134 (MQ=255) gAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGtac < 2:155095/75‑1 (MQ=255) gAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGtac > 1:155095/1‑75 (MQ=255) cccatcgcATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCa > 1:142160/6‑150 (MQ=255) tCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTCATC‑GCGCACGTCCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAgacga < 1:137337/150‑1 (MQ=255) gacgaGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGAcc > 2:240260/1‑150 (MQ=255) acgaGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCa > 1:365115/1‑150 (MQ=255) acgaGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCa > 1:365021/1‑150 (MQ=255) aaGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGcc > 2:328585/1‑150 (MQ=255) cGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCAt < 1:328585/150‑1 (MQ=255) | CGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCAT > NC_002947/43317‑43594 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |