Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC | NC_002947 | 4,712,487 | Δ33 bp | 38.7% | coding (673‑705/2115 nt) | PP_4171 → | hypothetical protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4712486 | 14 (0.720) | 9 (0.480) | 9/250 | NT | 38.7% | coding (672/2115 nt) | PP_4171 | hypothetical protein |
? | NC_002947 | 4712520 = | 15 (0.800) | coding (706/2115 nt) | PP_4171 | hypothetical protein |
GGACGGTATCAACGACTTCTATGCCAGCCACGGCTTGGGCTGGGACGGTGGCGACATGCGCCTGTCGCTGTCGGGCCAACAGGACGACGGCTTCGATGAGAACCAGTTCGGCCAGGACTACCGCGACAGCCGCCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4712348‑4712486 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgGCGGTCGACCAGACCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCAGCAATCAGCGGCCCTACACCTACCAACCGGTGTTCCAGCAGTACGAGTCCGGGAACAATGCCGACGTCAACGCCAAGGACTATGCGGGCTCGTTGCGCTGGA > NC_002947/4712520‑4712667 GGACGGTATCAACGACTTCTATGCCAGCCACGGCTTGGGCTGGGACGGTGGCGACATGCGCCTGTCGCTGTCGGGCCAACAGGACGACGGCTTCGATGAGAACCAGTTCGGCCAGGACTACCGCGACAGCCGCCGCCTGGCGGTCGACCA < 1:144342/150‑1 TATCAACGACTTCTATGCCAGCCACGGCTTGGGCTGGGACGGTGGCGACATGCGCCTGTCGCTGTCGGGCCAACAGGACGACGGCTTCGATGAGAACCAGTTCGGCCAGGACTACCGCGACAGCCGCCGCCTGGCGGTCGACCAGACCCT > 1:234121/1‑150 TCAACGACTTCTATGCCAGCCACGGCTTGGGCTGGGACGGTGGCGACATGCGCCTGTCGCTGTCGGGCCAACAGGACGACGGCTTCGATGAGAACCAGTTCGGCCAGGACTACCGCGACAGCCGCCGCCTGGCGGTCGACCAGACCCTGG > 1:435485/1‑150 CGACATGCGCCTGTCGCTGTCGGGCCAACAGGACGACGGCTTCGATGAGAACCAGTTCGGCCAGGACTACCGCGACAGCCGCCGCCTGGCGGTCGACCAGACCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCAGCAATCAGCGGCCCTA < 2:435485/150‑1 ACATGCGCCTGTCGCTGTCGGGCCAACAGGACGACGGCTTCGATGAGAACCAGTTCGGCCAGGACTACCGCGACAGGACCACCCGTGCGGTCGACCAGACCCTGGCGTGGAAACCGGCGGCCGAGGAAGGGAGCAATCAGCGGCCCTACA > 1:86129/1‑150 ACAGGACGACGGCTTCGATGAGAACCAGTTCGGCCAGGACTACCGCGACAGCCGCCGCCTGGCGGTCGACCAGACCCCGGAGCGGCAACTGGCGGCGAAGGAAGGCAGCAATCAGCGGCCTTACACCTACAAACCGGTGCTCCAGCAGTA > 1:471037/1‑150 GATGAGAACCAGTTCGGCCAGGACTACCGCGACAGCCGCCGCCTGGCGGTCGACCAGACCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCAGCAATCAGCGGCCCTACACCTACCAACCGGTGTTCCAGCAGTACGAGTCCGGGAACAAT > 1:72930/1‑150 CCAGGACTACCGCGACAGCCGCCGCCTGGCGGTCGACCAGACCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCAGCAATCAGCGGCCCTACACCTACCAACCGGTGTTCCAGCAGTACGAGTCCGGGAACAATGCCGACGTCAACGCCAA < 2:279425/150‑1 GACTACCGCGACAGCCGCCGCCTGGCGGTCGACCAGACCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCAGCAATCAGCGGCCCTACACCTACCAACCGGTGTTCCAGCAGTACGAGTCCGGGAACAATGCCGACGTCAACGCCAAGGAC < 2:72930/150‑1 TGGCGGTCGACCAGACCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCAGCAATCAGCGGCCCTACACCTACCAACCGGTGTTCCAGCAGTACGAGTCCGGGAACAATGCCGACGTCAACGCCAAGGACTATGCGGGCTCGTTGCGCTCGA < 2:19111/150‑1 GGACGGTATCAACGACTTCTATGCCAGCCACGGCTTGGGCTGGGACGGTGGCGACATGCGCCTGTCGCTGTCGGGCCAACAGGACGACGGCTTCGATGAGAACCAGTTCGGCCAGGACTACCGCGACAGCCGCCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4712348‑4712486 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgGCGGTCGACCAGACCCTGGAGTGGCAACTGGCGGCCAAGGAAGGCAGCAATCAGCGGCCCTACACCTACCAACCGGTGTTCCAGCAGTACGAGTCCGGGAACAATGCCGACGTCAACGCCAAGGACTATGCGGGCTCGTTGCGCTGGA > NC_002947/4712520‑4712667 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |