New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 786605	36 (1.860)	3 (0.170)	3/236	NT	9.9%	intergenic (+24/‑281)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor
	?	NC_002947	= 786691	22 (1.250)					intergenic (+110/‑195)	PP_0673/ettA	hypothetical protein/ADP/ATP ratio sensor/translation inhibitor

CGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCC  >  NC_002947/786457‑786752                                                                                                                                                      |                                                                                                                                                    cggcCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGAAGGGCGACGGTTGCCGCCTGCCGCGGGGCAAGTCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGccc                                                                                                                                                    <  2:425040/150‑1 (MQ=255)         cagcaACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCgg                                                                                                                                            <  2:139221/150‑1 (MQ=255)          agcaACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCggg                                                                                                                                           <  1:327969/150‑1 (MQ=255)                   cccGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGc                                                                                                                                  >  2:189446/1‑150 (MQ=255)                    ccGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCt                                                                                                                                 >  1:439884/1‑150 (MQ=255)                     cGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTc                                                                                                                                >  1:430255/1‑150 (MQ=255)                      gCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTcc                                                                                                                               >  2:32842/1‑150 (MQ=255)                             cggcTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCCAAGGa                                                                                                                        >  2:247240/1‑150 (MQ=255)                              ggcTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCCCGCCCGCTCCCACAGGaa                                                                                                                       <  2:120519/150‑1 (MQ=255)                              ggcTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCCCGGGCTCGCCCGCTCCCACAGGaa                                                                                                                       >  2:154438/1‑150 (MQ=255)                               gcTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAAt                                                                                                                      >  2:168759/1‑150 (MQ=255)                                 ttCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCGAGCCCGcgaaag                                                                                                                             >  1:125210/1‑136 (MQ=255)                                 ttCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCGAGCCCGcgaaag                                                                                                                             <  2:125210/141‑6 (MQ=255)                                  tCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATcgc                                                                                                                   <  2:430255/150‑1 (MQ=255)                                      cGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGaa                                                                                                               >  1:406683/1‑149 (MQ=255)                                          aaGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGAttctt                                                                                                           <  2:450229/150‑1 (MQ=255)                                                    gggCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCtgt                                                                                                 <  2:116155/150‑1 (MQ=255)                                                     ggCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCtgtg                                                                                                <  1:50171/150‑1 (MQ=255)                                                         gcgcgcCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGa                                                                                            <  2:439884/150‑1 (MQ=255)                                                                 ggCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCATCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTgg                                                                                    >  1:286402/1‑150 (MQ=255)                                                                    cGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                                     >  2:258803/1‑146 (MQ=255)                                                                    cGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCtgtg                                                                                     <  1:258803/146‑1 (MQ=255)                                                                     gAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGc                                                                                >  1:284901/1‑150 (MQ=255)                                                                      aGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCATCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCg                                                                               <  2:286402/150‑1 (MQ=255)                                                                             cGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGc                                                                        <  2:99520/150‑1 (MQ=255)                                                                                    tGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGaa                                                                 <  1:336015/150‑1 (MQ=255)                                                                                         ccTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAggc                                                            >  1:168759‑M2/1‑147 (MQ=255)                                                                                           tGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCtcttcgcgggcatgcccgctcccacagcgtcaccacagagcctgaagaatccgcgattcctgtgggagcgggcgagcccgcgaaagggccg                                                          >  1:85170‑M1/1‑59 (MQ=255)                                                                                              cgcgGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCtcttcgcgggcatgcccgctcccacagcgtcaccacagagcctgaagaatccgcgattcctgtgggagcgggcgagcccgcgaaagggccggca                                                       <  2:85170‑M1/150‑95 (MQ=255)                                                                                               gcgGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAggccgg                                                         >  1:480588‑M2/1‑141 (MQ=255)                                                                                               gcgGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAggccgg                                                         <  2:480588‑M2/147‑7 (MQ=255)                                                                                                    gCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCTGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCgg                                                                              <  2:240072/121‑1 (MQ=255)                                                                                                    gCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCgg                                                                              >  1:240072/1‑121 (MQ=255)                                                                                                    gCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCa                                                 >  2:217865/1‑150 (MQ=255)                                                                                                     cAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCtcttcgcgggcatgcccgctcccacagcgtcaccacagagcctgaagaatccgcgattcctgtgggagcgggcgagcccgcgaaagggccggcacagcagc                                                <  2:296335‑M1/150‑102 (MQ=255)                                                                                                      aaGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAAt                                               <  2:186452/150‑1 (MQ=255)                                                                                                         gCCAAACAGCGTCACGTCTGAGAAT‑TCAGACGTGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGaa                                            <  1:247240/150‑1 (MQ=38)                                                                                                           cAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAAtt                                          <  1:217865/150‑1 (MQ=255)                                                                                                                      aCGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGa                               <  2:284901/150‑1 (MQ=255)                                                                                                                      aCGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGa                               >  1:197828/1‑150 (MQ=255)                                                                                                                               tctcTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCGGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGa                      >  1:411416/1‑150 (MQ=255)                                                                                                                                       gc‑tgctGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAggccggcacagcagccgaagagactcagacgtgacgctgtttggccttg              <  2:296335‑M2/150‑50 (MQ=255)                                                                                                                                              gtgCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTAACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCAt        <  2:394859/150‑1 (MQ=255)                                                                                                                                               tgCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAggccggcacagcagccgaagagactcagacgtgacgctgtttggccttgccccgcg       <  2:85170‑M2/150‑57 (MQ=255)                                                                                                                                               tgCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGCATTCTTCATGCTCTTTGGTGACGCTGTGGGAGCTGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATc       <  1:32842/150‑1 (MQ=255)                                                                                                                                                 ccGGCCtcttcgcgggcatgcccgctcccacagcgtcaccacagagcctgaagaatccgcgattcctgtgggagcgggcgagcccgcgaaagggccggcacagcagccgaagagactcagacgtgacgctgtttggccttgccccgc        <  2:480588‑M1/147‑142 (MQ=255)                                                                                                                                                 ccGGCCtcttcgcgggcatgcccgctcccacagcgtcaccacagagcctgaagaatccgcgattcctgtgggagcgggcgagcccgcgaaagggccggcacagcagccgaagagactcagacgtgacgctgtttggccttgccccgc        >  1:480588‑M1/1‑6 (MQ=255)                                                                                                                                                  cGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAggccggcacagcagccgaagagactcagacgtgacgctgtttggccttgccccgcggca    >  1:85170‑M2/1‑91 (MQ=255)                                                                                                                                                    gCCtcttcgcgggcatgcccgctcccacagcgtcaccacagagcctgaagaatccgcgattcctgtgggagcgggcgagcccgcgaaagggccggcacagcagccgaagagactcagacgtgacgctgtttggccttgccccgcggcagg  >  1:168759‑M1/1‑3 (MQ=255)                                                                                                                                                      |                                                                                                                                                    CGGCCGAGCAGCAACCTGCCCGCAGCGGCGGCTTCAGCGTGAAGTCCGCCTGGGCCGCGCGCCTGGCCGAGCAGGGCGACCGTTGCCGCCTGCCGCGGGGCAAGGCCAAACAGCGTCACGTCTGAGTCTCTTCGGC‑TGCTGTGCCGGCCCTTTCGCGGGCTCGCCCGCTCCCACAGGAATCGCGGATTCTTCAGGCTCTGTGGTGACGCTGTGGGAGCGGGCATGCCCGCGAAGAGGCCGGCACAGGCAATGAATTCATCCCAGTGACCGCACTGATCACACCCCACCATCGGCCC  >  NC_002947/786457‑786752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.