New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1642089 = | 10 (0.520) | 3 (0.160) | 3/250 | NT | 20.9% | coding (126/393 nt) | PP_1442 | hypothetical protein |
? | NC_002947 | 1642134 = | 13 (0.690) | coding (81/393 nt) | PP_1442 | hypothetical protein |
TCGATAGGCCCGAGCTGCCGACGATACCGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAG > NC_002947/1641941‑1642196 | gcacaggcagcacaaatttcctcgatcatcgggtatcctcaggccatcgccagccttcggagccaccatgacctctcctcgtctgctcgttcccctgagcttcgccctgctttctgcttgcgcgcaacaatcctcgcagcccgttgacCt > 1:314654‑M1/149‑150 (MQ=255) aTAGGCCCGAGCTGCCGACGATACCGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGc < 1:42992/150‑1 (MQ=255) gacgaTACCGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCtt > 2:57520/1‑150 (MQ=255) cGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCAtt > 1:331952/1‑150 (MQ=255) ggggtCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTc > 1:446600/4‑150 (MQ=255) tCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTgg < 1:422176/120‑1 (MQ=255) tCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTgg > 2:422176/1‑120 (MQ=255) cTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCttt < 2:331952/150‑1 (MQ=255) ttCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTc > 1:424780/1‑150 (MQ=255) ccatcgccagccttcggagccaccatgacctctcctcgtctgctcgttcccctgagcttcgccctgctttctgcttgcgcgcaacaatcctcgcagcccgttgacCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAg > 1:141733‑M1/106‑150 (MQ=255) ttcggagccaccatgacctctcctcgtctgctcgttcccctgagcttcgccctgctttctgcttgcgcgcaacaatcctcgcagcccgttgacCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTc > 1:354409‑M1/94‑135 (MQ=255) ttcggagccaccatgacctctcctcgtctgctcgttcccctgagcttcgccctgctttctgcttgcgcgcaacaatcctcgcagcccgttgacCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTc < 2:354409‑M1/42‑1 (MQ=255) gCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGa < 1:57520/150‑1 (MQ=255) aaGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCTACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGa < 2:424780/150‑1 (MQ=255) gcGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAAc < 2:446600/150‑1 (MQ=255) cGGTAGTCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCTTTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACg > 1:488803/1‑150 (MQ=255) gTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAg < 2:230349/150‑1 (MQ=255) | TCGATAGGCCCGAGCTGCCGACGATACCGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAG > NC_002947/1641941‑1642196 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |