| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4886209 | 15 (0.780) | 7 (0.470) | 6/200 | NT | 32.9% | intergenic (+43/+80) | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | = 4886238 | 17 (1.140) | intergenic (+72/+51) | PP_4295/PP_4296 | TetR family transcriptional regulator/hypothetical protein | |||||
TCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGT > NC_002947/4886062‑4886356 | tCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGAt < 1:82672/150‑1 (MQ=255) cTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATc < 1:89265/150‑1 (MQ=255) tGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCACACAGGATca > 1:346494/1‑150 (MQ=255) ggTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATcacca < 1:56083/150‑1 (MQ=255) ggTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCt < 1:409451/150‑1 (MQ=255) gCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGt > 1:97633/1‑150 (MQ=255) aaGCTGGCCGACAGTGATTATGACGGGGCGGCCGCGACCATCATTGGTATGGTCTTGAAAGGTTGTGGGCCTGAGGCGGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCGAGCTCCCACAGGgactccacaaccttcaggcatgt < 1:117551‑M1/150‑24 (MQ=255) aaGCGGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATGCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgt < 1:436289/150‑1 (MQ=255) aGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg < 1:90459/150‑1 (MQ=255) aGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTtgtg < 1:410222/150‑1 (MQ=255) aCAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctg > 2:278029‑M2/1‑146 (MQ=255) aGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtg < 1:429800‑M1/150‑36 (MQ=255) gTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgg > 2:97633‑M2/1‑143 (MQ=255) gTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtgt > 2:208302‑M1/1‑114 (MQ=255) gTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGCCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtgt < 1:208302‑M1/150‑37 (MQ=255) aTGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgg < 1:67260‑M1/150‑43 (MQ=255) aaGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctg < 1:50908‑M1/102‑34 (MQ=255) aaGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGgactccacaaccttcaggcatgtggtgatcctg > 2:50908‑M1/1‑69 (MQ=255) aGGTTGGGAGCCTGAGGCAGCCTGAACCTTCTCGAAGGGCCATTCGCGGACAAGCCCGCTCCAACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCGGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTa < 1:162716/150‑1 (MQ=39) gAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCt > 1:361755/1‑150 (MQ=255) cTGAGGCAGCCTGAACCATCTCGAAGGGCCACTCGCGTGCATGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTAccc < 2:361755/150‑1 (MQ=255) aCCAGCTCGAGGGGCCAGGCGCTGGCAAGCCGGCGCCCACAGGATCACCACAGGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGACAAGAGAGGTTTAGGCCGCTACCCCGGCATCTGCCCGc > 2:131793/1‑150 (MQ=37) tctcGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGcc > 1:436524/1‑150 (MQ=255) ctcGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGccc < 2:436524/150‑1 (MQ=255) gAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAGGGTTGTGGAGTCCCCGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGccccgc > 2:255608/1‑148 (MQ=255) aGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGGGTAGGCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATc < 2:346494/150‑1 (MQ=255) ccGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcat < 1:67260‑M2/150‑109 (MQ=255) cGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGcac > 2:313312/1‑150 (MQ=255) ccACAGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcataatcac > 2:97633‑M1/1‑7 (MQ=255) acacagGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatgggccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcataatcac < 1:208302‑M2/149‑115 (MQ=255) acacagGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatgggccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcataatcac > 2:208302‑M2/2‑36 (MQ=255) cacaGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcataatcact < 1:429800‑M2/150‑116 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTg > 2:75034/1‑147 (MQ=255) acaGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTg < 1:75034/147‑1 (MQ=255) caGGgactccacaaccttcaggcatgtggtgatcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctttcaagaccatacgaatgatggtctcggccgccgcgtcataatcactgt > 2:278029‑M1/1‑4 (MQ=255) caGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctt < 1:50908‑M2/102‑70 (MQ=255) caGGATCACCACATGCCTGAAGGTTGTGGAGTCcctgtgggagcgggcttgcccgcgaatggcccttcgagatggttcaggctgcctcaggctcacaacctt > 2:50908‑M2/1‑33 (MQ=255) aagATCACCACCTGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCtcgt < 1:131793/148‑1 (MQ=255) | TCTGCGGTGACCGGTAAGGCCAAGCTGGCCGACAGTGATTATGACGCGGCGGCCGAGACCATCATTCGTATGGTCTTGAAAGGTTGTGAGCCTGAGGCAGCCTGAACCATCTCGAAGGGCCATTCGCGGGCAAGCCCGCTCCCACAGGATCACCACATGCCTGAAGGTTGTGGAGTCCCTGTGGGAGCGGGCTTGCCCGCGAATGGGCCAGAACAGGCAATAGAGATTTAGGCCGCTACCCCGGCATCTGCCCGCAGCCCCACCTCCTCGATCGCACTGATCGCACACTGCTCGT > NC_002947/4886062‑4886356 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |