New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5877063	31 (1.600)	4 (0.250)	4/210	NT	12.3%	intergenic (+29/+76)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	= 5877097	32 (2.040)					intergenic (+63/+42)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

CTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCA  >  NC_002947/5876915‑5877212                                                                                                                                                        |                                                                                                                                                      cTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGTCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACaa                                                                                                                                                      <  1:189848/150‑1 (MQ=255) cTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGAAAACCCG‑‑CTC‑CTACaa                                                                                                                                                      >  1:339095/1‑150 (MQ=255)  tGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAg                                                                                                                                                     >  2:65341/1‑150 (MQ=255)       gcgcAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTAcc                                                                                                                                                <  2:94522/150‑1 (MQ=255)       gcgcAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTAcc                                                                                                                                                <  2:217738/150‑1 (MQ=255)           aGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAg                                                                                                                                                     >  2:82790/1‑141 (MQ=255)           aGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAg                                                                                                                                                     <  1:82790/141‑1 (MQ=255)               cAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGc                                                                                                                                        <  2:110803/150‑1 (MQ=255)                 aCGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCt                                                                                                                                      <  1:349312/150‑1 (MQ=255)                            ggCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGc                                                                                                                           <  1:65341/150‑1 (MQ=255)                                   tGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCTCACCGGCCTGGAACCGTGGCGATCCCt                                                                                                                    >  1:103906‑M2/1‑149 (MQ=255)                                              cTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcggg                                                                                                         >  2:170863‑M2/1‑138 (MQ=255)                                                gTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtt                                                                                                       <  1:447904‑M2/150‑15 (MQ=255)                                                                        gctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagg                                                                                           <  2:450863‑M1/138‑61 (MQ=255)                                                                        gctgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagg                                                                                           >  1:450863‑M1/1‑78 (MQ=255)                                                                         ctgctgctgGGCACCGCTGAAGGCGTGAAAAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACACG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGGGATCTCTGTAGGACCGGGTTTACCCGCGAACAAGCCCTGACAgtc                                                                              >  1:79341/1‑148 (MQ=255)                                                                          tgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGa                                                                                   >  1:419546/1‑144 (MQ=255)                                                                          tgctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGa                                                                                   <  2:419546/144‑1 (MQ=255)                                                                           gctgctgGGAACCTCTTAATGCGTGAAGAGCCTGAAGGCCGAGTAAAACACTTC‑‑‑GATAGACCGGAAATCTGTATAAGGTCCCTCACCGGCCTGGAACCGTGGCGATCCCTCTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGa                                                                            <  1:159859/150‑1 (MQ=255)                                                                             tgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtc                                                                          >  1:455713/1‑150 (MQ=255)                                                                                     aCCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAgggatcgccacggttccaggccggtggggt                                                                                                                         >  2:444998‑M1/1‑65 (MQ=255)                                                                                     aCCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAgggatcgccacggttccaggccggtggggt                                                                                                                         <  1:444998‑M1/95‑31 (MQ=255)                                                                                     aCCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                  <  2:482276/150‑1 (MQ=255)                                                                                     aCCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                  <  1:189267/150‑1 (MQ=255)                                                                                         cTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACa                                                                                           >  1:383615/1‑121 (MQ=255)                                                                                         cTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACa                                                                                           <  2:383615/121‑1 (MQ=255)                                                                                              ggCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTg                                                         >  2:72861/1‑150 (MQ=255)                                                                                                 gggAAGAGCCTGGAGGCCGAGTAAAACCCGTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAac                                                      <  2:297579/148‑1 (MQ=255)                                                                                                   gAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAacac                                                    >  2:379983/1‑150 (MQ=255)                                                                                                      gagCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATa                                                 <  1:379983/150‑1 (MQ=255)                                                                                                         ccTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTGGGCTGCTTGAACACATAGaa                                              <  2:447904/150‑1 (MQ=255)                                                                                                          cTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                       >  2:451040/1‑124 (MQ=255)                                                                                                          cTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                       <  1:451040/124‑1 (MQ=255)                                                                                                                  cGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCgg                                     <  2:249017/150‑1 (MQ=255)                                                                                                                   gAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg                                                                                >  2:187457/1‑106 (MQ=255)                                                                                                                   gAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAg                                                                                <  1:187457/106‑1 (MQ=255)                                                                                                                            ccTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagc                                       <  2:450863‑M2/138‑79 (MQ=255)                                                                                                                            ccTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCtgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagc                                       >  1:450863‑M2/1‑60 (MQ=255)                                                                                                                                     gTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATg                  >  1:243898/1‑150 (MQ=255)                                                                                                                                        aaCCCG‑‑CTC‑CTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaac               <  1:447904‑M1/150‑137 (MQ=255)                                                                                                                                         aCCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                  <  2:323255/98‑1 (MQ=255)                                                                                                                                         aCCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCagtcagtc                                                                  >  1:323255/1‑98 (MQ=255)                                                                                                                                          cccG‑‑CTC‑CTACAgggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacag             >  2:170863‑M1/1‑12 (MQ=255)                                                                                                                                          cccG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt                                                  <  1:62219/113‑1 (MQ=255)                                                                                                                                          cccG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACAt                                                  >  2:62219/1‑113 (MQ=255)                                                                                                                                             g‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGt                       <  1:293918/137‑1 (MQ=255)                                                                                                                                             g‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGt                       >  2:293918/1‑137 (MQ=255)                                                                                                                                                        agggatcgccacggttccaggccggtgaggtaccttgtaggagcgggtttacccgcgaagggttttactcggccttcaggctcttcacgccttcagcggtgcccagcagcagcagatccgccggccgcgccgcgaacaggccgttggtca  >  1:103906‑M1/1‑1 (MQ=255)                                                                                                                                                        aaGGTACCCCACCGGCCTGGAACCGTGGCGATCAATGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTcatcca  <  1:3266/150‑1 (MQ=255)                                                                                                                                                        |                                                                                                                                                      CTGGAAGCGCAGATCAACGCCATCGTCGGCGTGGTGACCAACGGCCTGTTCGCGGCGCGGCCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCG‑‑CTC‑CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAGCGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCA  >  NC_002947/5876915‑5877212

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.