New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6080223	24 (1.240)	4 (0.220)	4/246	NT	14.6%	coding (111/897 nt)	PP_5332	hypothetical protein
	?	NC_002947	= 6080255	24 (1.300)					coding (143/897 nt)	PP_5332	hypothetical protein

TCCAAGGCCCACTGGCAATCAATGAGAAGAACGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTGGCAACCTGCAGCGCAACCCTCAGGCCGTCCAGGCCATGTACCA  >  NC_002947/6080078‑6080372                                                                                                                                                  |                                                                                                                                                      tCCAAGGCCCACTGGCAATCAATGAGAAGAACGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTAcc                                                                                                                                                   >  1:238512/1‑150 (MQ=255)         ccACTGGCAATCAATGAGAAGAACGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTa                                                                                                                                           <  1:37838/150‑1 (MQ=255)            cTGGCAATCAATGAGAAGAACGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGc                                                                                                                                        <  1:293514/150‑1 (MQ=255)                     aatGAGAAGAACGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAAccgccg                                                                                                                               >  2:153244/1‑150 (MQ=255)                      atGAGAAGAACGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACcgccgc                                                                                                                              >  1:106395/1‑150 (MQ=255)                         agaagaACGCAAGGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAAATCTGCAGGTGGTGTATCAGCAATGAGCTTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGTTCCTCAGCTACCAGCAGGTAGGCGAACCGCCgctgc                                                                                                                           <  2:67425/150‑1 (MQ=255)                              aaCGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGTCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCcacagcagcggcggttcgcctacctgctggtag                                                                                                                      >  1:490387‑M1/1‑117 (MQ=255)                               aCGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGTCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCcacagcagcggcggttcgcctacctgctggtagc                                                                                                                     <  2:490387‑M1/150‑35 (MQ=255)                                  cAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGgctga                                                                                                                  >  2:192664‑M2/1‑145 (MQ=255)                                   aaTGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCcacagcagcggcggttcgcctacctgctggtagctgc                                                                                                                  >  2:348542‑M1/1‑112 (MQ=255)                                   aaTGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCcacagcagcggcggttcgcctacctgctggtagctga                                                                                                                  <  1:348542‑M1/149‑38 (MQ=255)                                                          ccGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAgg                                                                                          >  1:257813/1‑150 (MQ=255)                                                                  cATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCg                                                                                  >  1:71875/1‑150 (MQ=255)                                                                    tGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGt                                                                                >  1:6503/1‑150 (MQ=255)                                                                        gAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAACAGGTAGGCGAACCGCCgctg                                                                                                                            <  1:333756/102‑1 (MQ=255)                                                                        gAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAACAGGTAGGCGAACCGCCgctg                                                                                                                            >  2:333756/1‑102 (MQ=255)                                                                            tCAACCGCTGGCGTATCAGCAGTGACCGTCCCCAACTCCTGATCGCCCAGCAGGGCGCACAGGTTCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCATGACATCTACCGCCAGGGCAAGTCAGTACGCGCCg                                                                        >  2:352304/1‑150 (MQ=255)                                                                                    tgGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGc                                                                                        >  1:316956/1‑126 (MQ=255)                                                                                    tgGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGc                                                                                        <  2:316956/126‑1 (MQ=255)                                                                                      gCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATc                                                                                                    >  1:102961/1‑112 (MQ=255)                                                                                      gCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATc                                                                                                    <  2:102961/112‑1 (MQ=255)                                                                                                 gTGACCGTGCCGAACTCCTGACCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCAt                                                   <  1:157092/150‑1 (MQ=255)                                                                                                        tcccGCACTCCTGATCGCCCCGCAGGGCGCACAGGTCCTCACCTACCCGCAGGTAGGCGAACCGCCGCTGCTGGGGCTGAGCGACCAGGCCATCTTCCGCCAGGTCAAGTCCGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTgg                                            <  1:352304/148‑1 (MQ=255)                                                                                                        tGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTgg                                            >  1:383310/1‑150 (MQ=255)                                                                                                                   tGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTGGCAACCTGCAgc                                 >  1:27876/1‑150 (MQ=255)                                                                                                                          ccAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTGGCAACCTGCAGCGCAAccc                          >  1:292191/1‑150 (MQ=255)                                                                                                                                     atcaGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTGGCAACCTGCAGCGCAACCCTCAGGCCGTcc               <  2:145249/148‑1 (MQ=255)                                                                                                                                      acaGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTGGCAACCTGCAGCGCAACCCTCAGGCCGTCCa              <  2:257813/150‑1 (MQ=255)                                                                                                                                         ggTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTGGCAACCTGCAGCGCAACCCTCAGGCCGTCCAGGc           <  1:153244/150‑1 (MQ=255)                                                                                                                                            ccTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTGGCAACCTGCAGCGCAACCCTCAGGCCGTCCAGGCCAt        >  1:482348/1‑150 (MQ=255)                                                                                                                                              tCAGCcacagcagcggcggttcgcctacctgctggtagctgaggacctgtgcgccctgctgggcgatcaggagttcggcacggtcactgctgatacgccagcagttgagttcgccatgttgctcggttacgacctgaaaggtagccattg      >  2:192664‑M1/1‑5 (MQ=255)                                                                                                                                              tCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGgctgaggacctgtgcgccctgctgggcgatcaggagttcggcacggtcactgctgatacgccagcagttgagttcgccatgttgctcggttacgacctgaaaggtagccatt       <  1:348542‑M2/149‑113 (MQ=255)                                                                                                                                              gcaGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGgctgaggacctgtgcgccctgctgggcgatcaggagttcggcacggtcactgctgatacgccagcagttgagttcgccatgttgctcggttacgacctgaaaggtagccatt       >  2:348542‑M2/2‑37 (MQ=255)                                                                                                                                                 gCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGgctgaggacctgtgcgccctgctgggcgatcaggagttcggcacggtcactgctgatacgccagcagttgagttcgacatgttgctcggttacgacctgaaaggtagccattgcgt   <  2:490387‑M2/150‑117 (MQ=255)                                                                                                                                                  cTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGgctgaggacctgtgcgccctgctgggcgatcaggagttcggcacggtcactgctgatacgccagcagttgagttcgacatgttgctcggttacgacctgaaaggtagccattgcgtt  >  1:490387‑M2/1‑33 (MQ=255)                                                                                                                                                  |                                                                                                                                                      TCCAAGGCCCACTGGCAATCAATGAGAAGAACGCAATGGCTACCTTTCAGGTCGTAACCGAGCAACATGGCGAACTCAACTGCTGGCGTATCAGCAGTGACCGTGCCGAACTCCTGATCGCCCAGCAGGGCGCACAGGTCCTCAGCTACCAGCAGGTAGGCGAACCGCCGCTGCTGTGGCTGAGCGACCAGGCCATCTTCCGCCAGGGCAAGTCGGTACGCGCCGGGGTACCGGTGTGCTGGCCATGGTTTGGCAACCTGCAGCGCAACCCTCAGGCCGTCCAGGCCATGTACCA  >  NC_002947/6080078‑6080372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.