| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 445088 | 19 (0.980) | 5 (0.330) | 4/204 | NT | 20.4% | intergenic (+58/‑230) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| ? | NC_002947 | = 445127 | 24 (1.570) | intergenic (+97/‑191) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase | |||||
TCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCT > NC_002947/444981‑445268 | tCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttc < 1:87432‑M2/150‑4 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 1:237628‑M2/1‑143 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 1:435211‑M2/1‑143 (MQ=255) gCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcggg > 2:345455‑M2/1‑142 (MQ=255) tCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaa > 2:118607‑M2/1‑139 (MQ=255) cgacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagc < 1:359314‑M2/150‑14 (MQ=255) gacgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcc < 1:269676‑M2/150‑15 (MQ=255) aaaTGCTTGGCCGGATAATAGACAAATACGCCTGAATACTTGCGGCATCCCCTATTTAAGCGCCTGCCTTGTAAGAGCGCGCTTGCCCGCGAACGAGTCAAACCACAGAACATTTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCt < 2:69626/150‑1 (MQ=255) tGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaa > 2:432991‑M2/1‑125 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 1:9426‑M2/1‑114 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg < 2:9426‑M2/121‑8 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGtggc < 2:305907/150‑1 (MQ=255) tcGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGACTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGtggc < 2:304254/150‑1 (MQ=255) acacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACATTTTTGTCTGGTCGGGCGCCTTCG‑CGGGCACGCCCGCTCCTAC‑AAGGGTTTGtggcatg < 2:389390/150‑1 (MQ=255) cacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGtggcatgg < 2:429277/150‑1 (MQ=255) gCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACt < 2:359314/150‑1 (MQ=255) tACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg < 1:280806‑M2/103‑8 (MQ=255) tACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 2:280806‑M2/1‑96 (MQ=255) tACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGc < 1:15828/150‑1 (MQ=255) ccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGa < 2:327703/127‑1 (MQ=255) ccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGa > 1:327703/1‑127 (MQ=255) aGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGc < 2:235719/150‑1 (MQ=255) gcgcCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGGCAACAATTTTTTCTGGTCGGGCATCTTCGAAGAGCA‑‑CACGTCTGTACTAAAGGCTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa > 1:479961/1‑150 (MQ=255) gAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCtt < 2:269676/150‑1 (MQ=255) gCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa > 2:165040/1‑150 (MQ=255) cccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa < 2:175397/141‑1 (MQ=255) cccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGa > 1:175397/1‑141 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc < 1:439384‑M2/150‑105 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg < 2:479961/150‑1 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcct < 2:79908‑M2/150‑106 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGa < 1:165040/150‑1 (MQ=255) cgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctc > 2:486177‑M2/1‑43 (MQ=255) cgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctc < 1:486177‑M2/62‑20 (MQ=255) cgaggcccGACCAGACAAAATTGTTGTCTGAGCGGACGCATTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTaa > 2:265123/7‑150 (MQ=21) gTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgccttgacgacct > 1:79908‑M2/1‑36 (MQ=255) tCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg > 1:74848/1‑139 (MQ=255) tCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTg < 2:74848/139‑1 (MQ=255) tCCGATCAGACAACAATTTTGTATGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTa > 2:375074/1‑150 (MQ=255) tatCAGACAACAATTTTGTCTGGTCGGGCGCAttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgccttgacgacctttgc < 2:22892‑M2/149‑119 (MQ=255) gATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgccttgacgacctttgc > 2:439384‑M2/1‑32 (MQ=255) aaTTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACt < 1:375074/150‑1 (MQ=255) tgatCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCg > 2:73248/4‑150 (MQ=255) tGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCg > 1:486870/1‑150 (MQ=255) tCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCt < 1:73248/150‑1 (MQ=255) | TCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCG‑CGGGCAAGCCCGCTCCTAC‑AAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTAAACGTAAGTTTCAAACAACTGTTTGATCGGCT > NC_002947/444981‑445268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |