New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5205221 | 20 (1.030) | 5 (0.270) | 5/250 | NT | 23.1% | intergenic (+64/+51) | PP_4585/PP_4586 | TrmH family RNA methyltransferase/hypothetical protein |
? | NC_002947 | = 5205267 | 14 (0.750) | intergenic (+110/+5) | PP_4585/PP_4586 | TrmH family RNA methyltransferase/hypothetical protein |
AAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCGGTACTGACGCTGGGCAGGCGCATCAGCCCACGCACTACATC > NC_002947/5205119‑5205388 | aaaGGGCTGAATACCCGCTCAGTGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCATGCAAGGCTTTTCATACGg > 2:346520‑M2/1‑149 (MQ=255) tGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAGGGTCAGGCAAGGCTTTTCATACGGGCCTTAg > 2:308202/1‑150 (MQ=255) gAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCATGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGt < 1:209985/150‑1 (MQ=255) aCCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCaa < 1:296497/150‑1 (MQ=255) gCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACAcc < 2:354761/150‑1 (MQ=255) ggCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGctc > 2:64761/1‑150 (MQ=255) aaGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTgcag < 2:141137/150‑1 (MQ=255) aaCAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGaa < 2:254847/150‑1 (MQ=255) aCAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAAc < 1:64761/150‑1 (MQ=255) gcgAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCAc > 1:39636/1‑150 (MQ=255) gCTGTTAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGa < 1:180509/150‑1 (MQ=255) cTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGAt > 1:378010/1‑150 (MQ=255) cAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCg < 2:377686/150‑1 (MQ=255) cgcCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGggcccaaggcatccctggcgcctgtcccg < 2:153122‑M2/95‑30 (MQ=255) cgcCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGggcccaaggcatccctggcgcctgtcccg > 1:153122‑M2/1‑66 (MQ=255) aTGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCGGTACTGACGCTg < 2:378010/150‑1 (MQ=255) cTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGggcccaaggcatccctggcgcctgtcccggcctttgacagcccaagcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagcccttt < 2:38118‑M2/150‑104 (MQ=255) aaGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACAggcccaaggcatccctggcgcctgtcccggcctttgacagcccaagcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcg < 1:457333‑M2/150‑113 (MQ=255) gaCGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCGGTACTGACGCTGGGCAGGCGCATCAGCCCACGCACTACATc > 1:425529/1‑150 (MQ=255) gaCGAAGGTCAGGCAAGGCTTTTCATACAggcccaaggcatccctggcgcctgtcccggcctttgacagcccaagcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcggtcatacaa > 2:457333‑M2/1‑29 (MQ=255) tttCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAAc < 2:260523/48‑1 (MQ=255) tttCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAAc > 1:260523/1‑48 (MQ=255) | AAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCGGTACTGACGCTGGGCAGGCGCATCAGCCCACGCACTACATC > NC_002947/5205119‑5205388 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |