New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6000957 =	30 (1.550)	6 (0.310)	6/256	NT	16.5%	intergenic (+8/+101)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6001055 =	31 (1.620)					intergenic (+106/+3)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase

TTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCA  >  NC_002947/6000907‑6001197                                                                                                                                                     |                                                                                                                                               ttCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTa                                                                                                                                               >  1:153551/1‑150 (MQ=255)        aagaagGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACATGTAGGAGCGGGTTTAACCGCGAAGAGGCCAGTACTTacaa                                                                                                                                        <  1:314239/150‑1 (MQ=255)               gTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAAcc                                                                                                                                 <  1:223367/150‑1 (MQ=255)                   cTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGCTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCa                                                                                                                             <  1:470599/150‑1 (MQ=255)                    ggggcagtgcctgagggttgtgttgtaagtaCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAg                                                                                                                            >  1:387563‑M1/32‑150 (MQ=255)                            ttggttgCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGcc                                                                                                                    >  1:172364/1‑150 (MQ=255)                              ctgagggttgtgttgtaagtactggcctcttcgcgggtaaacccgctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggTACTTACAACACAACCCTCAGGCACTGcccc                                                                                                                  >  1:387563‑M2/120‑150 (MQ=255)                               gttgCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCcg                                                                                                                 >  2:458174/1‑150 (MQ=255)                                    acaAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTATAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTACGGCACTGCCCCGCGTgg                                                                                                            >  1:61077/1‑150 (MQ=255)                                                  gCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAAcc                                                                                              <  2:13511/150‑1 (MQ=255)                                                  gCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAAcc                                                                                              <  1:146539/150‑1 (MQ=255)                                                   CCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAgg                                                                                                                           <  1:37127‑M1/120‑1 (MQ=255)                                                   CCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAgg                                                                                                                           >  2:37127‑M1/1‑120 (MQ=255)                                                   CCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCg                                                                                             <  2:201501‑M1/150‑1 (MQ=255)                                                           ttcgcgggtaaacccgctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccagTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACt                                                                                         >  1:47732‑M2/91‑146 (MQ=255)                                                           ttcgcgggtaaacccgctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccagTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACt                                                                                         <  2:47732‑M2/56‑1 (MQ=255)                                                                  gTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGGTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCt                                                                              >  1:256229/1‑150 (MQ=255)                                                                     aaCCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTc                                                                           <  1:63022/150‑1 (MQ=255)                                                                        ccgctcctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGc                                                                        >  2:3329‑M2/78‑150 (MQ=255)                                                                        ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTa                                                                                                                                               <  1:20525/79‑1 (MQ=255)                                                                        ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTa                                                                                                                                               >  2:20525/1‑79 (MQ=255)                                                                        ccGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGc                                                                        >  1:294120/1‑150 (MQ=255)                                                                         cGCTCCGACAAGTGGTGCACCGCCTGAGATGGCTGTGGTGAACCTATAGGAGCGGGTTTACCCGCGAAGAGGCCAGTAGTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCAGAGAACGCTGTCCGCa                                                                       <  2:61077/150‑1 (MQ=39)                                                                              ctacaggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGaa                                                                  <  2:387563‑M2/79‑1 (MQ=255)                                                                              cTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGac                                                                  <  1:458174/150‑2 (MQ=255)                                                                                  aaGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGgcg                                                              >  1:237044/1‑150 (MQ=255)                                                                                      agtGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCAGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCt                                                          <  2:153551/150‑1 (MQ=255)                                                                                       gtGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTc                                                         >  2:464595/1‑150 (MQ=255)                                                                                          cACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTcaca                                                      >  2:133123/1‑150 (MQ=255)                                                                                           aCCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCa                                                                                                                             >  2:183700/1‑78 (MQ=255)                                                                                           aCCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCa                                                                                                                             <  1:183700/78‑1 (MQ=255)                                                                                           aCCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGt                                                                            <  1:22044/127‑1 (MQ=255)                                                                                           aCCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGt                                                                            >  2:22044/1‑127 (MQ=255)                                                                                               ccTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCt                                                 <  1:133123/150‑1 (MQ=255)                                                                                                 tGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCa                                               >  1:55398/1‑150 (MQ=255)                                                                                                      gggCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGc                                          <  1:201501/150‑1 (MQ=255)                                                                                                            tggtgAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAAc                                    <  2:237044/150‑1 (MQ=255)                                                                                                                 aaCCTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAAt                               <  2:301012/150‑1 (MQ=255)                                                                                                                     tGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGc                           <  2:172364/150‑1 (MQ=255)                                                                                                                            gCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTACCCCGCGTGGTACAGCGAAAAACCGGa                                                                                           >  1:77185/1‑79 (MQ=255)                                                                                                                            gCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTACCCCGCGTGGTACAGCGAAAAACCGGa                                                                                           <  2:77185/79‑1 (MQ=255)                                                                                                                               ggTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCg                 >  1:446926/1‑150 (MQ=255)                                                                                                                                           aaGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGa     <  1:464595/150‑1 (MQ=255)                                                                                                                                              aggccggTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCa  <  1:3329‑M2/143‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               TTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCA  >  NC_002947/6000907‑6001197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.