Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,110,826 | A→G | 26.7% | L868L (CTA→CTG) | PP_3616 → | membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,110,826 | 0 | A | G | 26.7% | 16.1 / 4.9 | 15 | L868L (CTA→CTG) | PP_3616 | membrane protein |
Reads supporting (aligned to +/- strand): ref base A (4/7); new base G (2/2); total (6/9) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 |
CGTAGCATATTCGGCAATCGCATCAATGATGGAGAGGCGCACGCCGACATCAACTTGGACTTTGACAAAAAACTGCCTGCTTTCACCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAACCACTGGTCGCCGCCAAATTGGACAGCTATCACACATAACGAAGTAGCCACCCCCCAACCAACCGTAGA > NC_002947/4110683‑4110957 | cGTAGCATATTCGGCAATCGCATCAATGATGGAGAGGCGCACGCCGACATCAACTTGGACTTTGACAAAAAACTGCCTGCTTTCACCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATccgcc < 1:436339/150‑1 (MQ=255) cAATGATGGAGAGGCGCACGCCGACATCAACTTGGACTTTGACAAAAAACTGCCTGCTTTCACCTCCCTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCAt < 2:194434/150‑1 (MQ=255) aaTGATGGAGAGGCGCACGCCGACATCAACTTGGACTTTGACAAAAAACTGCCTGCTTTCACCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTGTCCGCCGAGCAGGCCCTATCCCTCGGCATa > 1:196162/1‑150 (MQ=255) cAACTTGGACTTTGACAAAAAACTGCCTGCTTTCACCTCACTGCAAACGGAAATTAAGGCTTGGCCCAATGAACATTACGGGTTCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCa > 1:30614/1‑150 (MQ=255) aCTTTGACAAAAAACTGCCTGCTTTCACCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAAcc < 1:69341/150‑1 (MQ=255) cctgcTTTCACCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTGTCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAACCACTgg > 2:428153/1‑138 (MQ=255) cctgcTTTCACCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTGTCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAACCACTgg < 1:428153/138‑1 (MQ=255) aCCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAACCACTGGTCGCCGCCAAATTGGACAGCt > 2:139741/1‑150 (MQ=255) aCCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACAACCGATGGCATCAGAATAACCACTGGTCGCCGCCAAATTGGACAGCt < 1:380018/150‑1 (MQ=255) cTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGAt > 1:443812/1‑107 (MQ=255) cTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGAt < 2:443812/107‑1 (MQ=255) tCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACGCGATGGCATCAGAATAACCACTGGTCGCCGCCAAATTGGACAGCTATc > 2:330004/1‑150 (MQ=255) tGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAACCACTGGTCGCCGCCAAATTGGACAGCTATcacac < 1:139741/150‑1 (MQ=255) cTTGGCACAATGAACATTACGGGCCCAAGCTACTGTCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAACCACTGGTCGCCGCCAAATTGGACAGCTATCACACATAACGAAGTAGCCAccc < 2:196162/150‑1 (MQ=255) ttACGAGCCCAAGATACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAACCACTGGTCGCCGCCAAATTGGACAGCTATCACACATAACGAAGTAGCCACCCCCCAACCAACCGTaga < 1:195820/150‑1 (MQ=255) ctactaTCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCg > 2:420875/1‑53 (MQ=255) ctactaTCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCg < 1:420875/53‑1 (MQ=255) | CGTAGCATATTCGGCAATCGCATCAATGATGGAGAGGCGCACGCCGACATCAACTTGGACTTTGACAAAAAACTGCCTGCTTTCACCTCACTGCAAACGGAAATTAAGGCTTGGCACAATGAACATTACGGGCCCAAGCTACTATCCGCCGAGCAGGCCCTATCCCTCGGCATAACTAAAGCCGACACCCGATGGCATCAGAATAACCACTGGTCGCCGCCAAATTGGACAGCTATCACACATAACGAAGTAGCCACCCCCCAACCAACCGTAGA > NC_002947/4110683‑4110957 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |