Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,171,851 | T→A | 13.8% | T106S (ACG→TCG) | PP_3670 ← | DMT superfamily permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,171,851 | 0 | T | A | 13.8% | 74.3 / 5.3 | 29 | T106S (ACG→TCG) | PP_3670 | DMT superfamily permease |
Reads supporting (aligned to +/- strand): ref base T (10/15); new base A (2/2); total (12/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.56e-01 |
AAACATCGCCCCGCCAGGGTGCACCACCACCAGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAG > NC_002947/4171705‑4171998 | aaaCATCGCCCCGCCAGGGTGCACCACCACCAGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTg > 1:21186/1‑148 (MQ=255) aaaCATCGCCCCGCCAGGGTGCACCACCACCAGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTg < 2:21186/148‑1 (MQ=255) cGCCAGGGTGCACCACCACCAGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTg > 2:89833/1‑150 (MQ=255) gCACCACCACCAGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTAtt < 1:143751/150‑1 (MQ=255) ccaccaccaGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGAGGCCACGGccgtcaa > 2:414350/1‑134 (MQ=255) ccaccaccaGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGAGGCCACGGccgtcaa < 1:414350/139‑6 (MQ=255) caccaccaGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCCCTGTGACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTAGCCTCGGCCAATACAAGGTATTGCaa > 2:206471/1‑150 (MQ=255) caccaccaGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTTTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCaa < 1:233827/150‑1 (MQ=255) ccaccaGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGc < 1:103427/150‑1 (MQ=255) gCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTc > 1:98347/1‑145 (MQ=255) gCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTc < 2:98347/145‑1 (MQ=255) tAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAAcagca < 2:283029/150‑1 (MQ=255) cacTGCCCCCCTGTCACTCGCGGTTTGAGAAGGGGCGCCGCGAGCGCGGTGACCAAGATCGGGGCAAGGATGTTGAGGGCCGTGGCCTCGGACAGTGGCAGGTATTGCAAGCCGGTGGTGAACAGCCGGCTGGTGTTCAGCAGGCTCAgg < 2:48883/150‑1 (MQ=255) aCTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAg > 2:270698/1‑150 (MQ=255) cTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCa > 1:300347/1‑150 (MQ=255) tCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCaa > 1:141958/1‑150 (MQ=255) tctTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATAcc < 1:89833/150‑1 (MQ=255) gcgcGGTGACCAGCATCGGTGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCCGCAATAGCGGCCGGCGGGTGCGCAACACGt < 2:368511/150‑1 (MQ=255) cgcgGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGtt < 2:141958/150‑1 (MQ=255) aCCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCa < 1:270698/150‑1 (MQ=255) aCCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCa < 1:224304/150‑1 (MQ=255) aCCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGa < 1:291850/64‑1 (MQ=255) aCCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGa > 2:291850/1‑64 (MQ=255) gTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGcc < 1:206471/150‑1 (MQ=255) tGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGtt > 2:320233/1‑121 (MQ=255) tGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGtt < 1:320233/121‑1 (MQ=255) ctggCCGAGGCCACGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTgg < 2:19822/131‑1 (MQ=255) ctggCCGAGGCCACGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTgg > 1:19822/3‑133 (MQ=255) cGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAg > 2:392187/1‑150 (MQ=255) | AAACATCGCCCCGCCAGGGTGCACCACCACCAGCACGCCGATAAAGCCCATCACCACCGCCACCCACTGCCCCACTGTCACTCGCTCTTTGAGCAGCGGCGCCGACAGCGCGGTGACCAGCACCGGGGCAAGGAAGTTGACGGCCGTGGCCTCGGCCAGTGGCAGGTATTGCAAGCCGGTCGTGAACAGCAGGCTGGTGCTCAGCAGGCTCAGGGCCCGCAAGGTCTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAG > NC_002947/4171705‑4171998 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |