Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,268,815 | A→G | 10.2% | A451A (GCA→GCG) | PP_4643 → | xanthine/uracil permease family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,268,815 | 0 | A | G | 10.2% | 104.5 / 3.4 | 39 | A451A (GCA→GCG) | PP_4643 | xanthine/uracil permease family protein |
Reads supporting (aligned to +/- strand): ref base A (16/19); new base G (2/2); total (18/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.87e-01 |
CTTCTACCACCACTTCCCGAACTGGTTCGAGACCATCTTCCACTCCGGCATCAGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGC > NC_002947/5268674‑5268964 | cTTCTACCACCACTTCCCGAACTGGTTCGAGACCATCTTCCACTCCGGCATCAGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTACAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGa > 2:312357/1‑150 (MQ=255) caccacTTCCCGAACTGGTTCGAGACCATCTTCCACTCCGGCATCAGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCAcc < 2:331220/150‑1 (MQ=255) acTTCCCGAACTGGTTCGAGACCATCTTCCACTCCGGCATCAGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATcc > 2:324032/1‑150 (MQ=255) cTTCCCGAACTGGTTCGAGACCATCTTCCACTCCGGCATCAGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCa < 2:72977/150‑1 (MQ=255) cttgTTCGAGACCCTCCTCCACTCCGGGATTAGCTCGGCCGCGATCATGGCCATACTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGa < 2:94317/147‑1 (MQ=255) cACTCCGGCATCAGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGAt < 2:235345/150‑1 (MQ=255) aCTCCGGCATCAGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATg > 1:194893/1‑150 (MQ=255) aGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTc > 2:314701/1‑150 (MQ=255) gCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCa > 2:87907/1‑150 (MQ=255) cTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCaa < 2:331407/150‑1 (MQ=255) tCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAg > 2:51398/1‑150 (MQ=255) cggcgATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATg < 2:139287/150‑1 (MQ=255) cggcgATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACGCGGAAAACCGGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGTGACTACTTCAAGGATg < 2:215788/150‑1 (MQ=255) cATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGca < 2:169183/150‑2 (MQ=255) cATCCTGCTGAACCTGATCTTCCACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGa > 1:383819/1‑150 (MQ=255) ctgAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAg > 1:164069/1‑150 (MQ=255) tgAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAgg < 1:324032/150‑1 (MQ=255) aCCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCGGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCaa < 2:54071/109‑1 (MQ=255) aCCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCGGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCaa > 1:54071/1‑109 (MQ=255) aCCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCGGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCaa > 1:300410/1‑109 (MQ=255) aCCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCGGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCaa < 2:300410/109‑1 (MQ=255) aCCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGa < 1:314701/150‑1 (MQ=255) aCCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGa > 1:197998/1‑150 (MQ=255) cATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAg > 2:221415/1‑66 (MQ=255) cATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAg < 1:221415/66‑1 (MQ=255) aTTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGc < 1:51398/150‑1 (MQ=255) ttCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTg < 2:197998/150‑1 (MQ=255) accGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTg > 2:454658/1‑150 (MQ=255) gCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAgcg > 1:281908/1‑43 (MQ=255) gCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAgcg < 2:281908/43‑1 (MQ=255) gCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAgg < 1:207662/120‑1 (MQ=255) gCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAgg > 2:207662/1‑120 (MQ=255) cTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCa < 2:93470/150‑1 (MQ=255) tCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCAc > 1:417546/1‑150 (MQ=255) cGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACg < 2:194893/150‑1 (MQ=255) aaCCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAAt < 1:87907/150‑1 (MQ=255) gtcagtGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCACTTATGGTCCGAGGGTAACGAAGTGACGATGCTGAAACTGGACGAGCACGGCAATGAAAc > 1:5126/1‑150 (MQ=255) tcagtGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACg < 2:164069/150‑1 (MQ=255) gtgtTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTc > 2:107860/1‑150 (MQ=255) aGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGc > 2:140033/1‑150 (MQ=255) | CTTCTACCACCACTTCCCGAACTGGTTCGAGACCATCTTCCACTCCGGCATCAGCTCGGCGGCGATCATGGCCATCCTGCTGAACCTGATCTTCAACCATTTCACCACCGGCAACTCGGAAAACCAGTCAGTGTTCGCTGCAGCCTACGAGCGCACCATCCAGTATTCGGACATTTCCGCGCTGCGTGATGGGGACTACTTCAAGGATGGCAAGCTGTTCGATGCCGAGGGTAACGAAGTGCCGATGCTGGAACTGGACGAGCACGGCAATGAAACGGTCAGGCGCACGGC > NC_002947/5268674‑5268964 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |