Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,172,551 | G→T | 12.9% | A196E (GCG→GAG) | PP_5410 ← | DeoR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,172,551 | 0 | G | T | 12.9% | 77.2 / 3.0 | 31 | A196E (GCG→GAG) | PP_5410 | DeoR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (15/12); new base T (2/2); total (17/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01 |
GCGGGCTTGAATTTGTTCGCGCGCTGCTGCTGGCAGGCGTTCATCTGTAATAAGGGTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTGCTCCGCGACCTGGCCCTGGAACGATT > NC_002947/6172403‑6172689 | gcgGGCTTGAATTTGTTCGCGCGCTGCTGCTGGCAGGCGTTCATCTGTAATAAGGGTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGc < 2:391121/150‑1 (MQ=255) ttGAATTTGTTCGCGCGCTGCTGCTGGCAGGCGTTCATCTGTAATAAGGGTATGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGAc > 1:81378/1‑150 (MQ=255) aTTTGTTCGCGCGCTGCTGCTGGCAGGCGTTCATCTGTAATAAGGGTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCgg > 1:258734/1‑150 (MQ=255) tCGCGCGCTGCTGCTGGCAGGCGTTCATCTGTAATAAGGGTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGc < 1:144759/150‑1 (MQ=255) gctgGCAGGCGTTCATCTGTAATAAGGGTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCg < 2:258734/150‑1 (MQ=255) cAGGCGTTCATCTGTAATAAGGGTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGaa > 1:447694/1‑150 (MQ=255) gCGTTCATCTGTAATAAGGGTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGt > 2:29381/1‑150 (MQ=255) ggTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAg < 2:447694/150‑1 (MQ=255) gtgtGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAg < 1:168971/133‑1 (MQ=255) gtgtGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAg > 2:168971/1‑133 (MQ=255) acTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCTCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGcc > 1:158429/1‑150 (MQ=255) acTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGcc > 2:66455/1‑150 (MQ=255) cccAGGGCAGCTCGAGGTTAGTGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCgg > 1:423507/1‑150 (MQ=255) ccAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGgc > 2:316704/1‑150 (MQ=255) ttAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTgg > 1:445757/1‑150 (MQ=255) ttGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCg > 1:61685/1‑150 (MQ=255) tttGTCCGACTCGACCATCGCGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAg < 2:325338/149‑1 (MQ=255) cGACTCGACCATCACGATCACTTCACGGGCAACTTCCTCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGt > 1:328350/1‑95 (MQ=255) cGACTCGACCATCACGATCACTTCACGGGCAACTTCCTCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGt < 2:328350/95‑1 (MQ=255) cGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTg > 1:159047/1‑150 (MQ=255) cGACCATCACGATCACTTCACGGGCAACTTCCTCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTGCTCcg < 2:158429/150‑1 (MQ=255) gACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTGCTCcgc < 2:423507/150‑1 (MQ=255) cATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAgcgc < 1:367918/133‑1 (MQ=255) cATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAgcgc > 2:367918/1‑133 (MQ=255) aCGATCACTTCACGGGCAACTTCCGCCATGACACGGCTCAGTCTAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTGCTCCGCGACCTgg < 2:81378/150‑1 (MQ=255) cTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTGCTCCGCGACCTGGCCCTGGa < 1:205465/150‑1 (MQ=255) ttCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTGCTCCGCGACCTGGCCCTGGaa < 1:29381/150‑1 (MQ=255) tCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCa < 2:33321/36‑1 (MQ=255) tCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCa > 1:33321/1‑36 (MQ=255) tCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTGCTCCGCGACCTGGCCCTGGAAc > 1:308673/1‑150 (MQ=255) gtgCAACTTCAGCCATGACCCGGCTCAGCACAAGCAACTCGTTGAAGGGAGTGGTGCCCCGGCGCAGGACGATGCCGTCGGCGCCGATGAATAATTGGTCGGAATCGTAGGAGCGCAGTACCTGCTCCGCGACCTGGCCCTGGAACGAtt > 2:319019/3‑150 (MQ=255) | GCGGGCTTGAATTTGTTCGCGCGCTGCTGCTGGCAGGCGTTCATCTGTAATAAGGGTGTGCACACTGCCCCAGGGCAGCTCGAGGTTAGGGATCTTGCGCCCCACCTTGTCCGACTCGACCATCACGATCACTTCACGGGCAACTTCCGCCATGACCCGGCTCAGCCCAAGCAACTCGTTGAAGGTAGTGGTACCCCGGCCCAGGTCGATGCCGTCGGCGCCGATGAATAATTGGTCGAAATCGTAGGAGCGCAGTACCTGCTCCGCGACCTGGCCCTGGAACGATT > NC_002947/6172403‑6172689 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |