Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 72,026 | G→A | 8.2% | R275C (CGT→TGT) | glyQ ← | glycine‑tRNA ligase subunit alpha |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 72,026 | 0 | G | A | 8.2% | 138.1 / 2.9 | 49 | R275C (CGT→TGT) | glyQ | glycine‑tRNA ligase subunit alpha |
Reads supporting (aligned to +/- strand): ref base G (22/23); new base A (2/2); total (24/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01 |
CCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGCTTGATCAGGCGGTTGGCTTCG > NC_002947/71883‑72159 | ccAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGCGGGCCGCGCGTGCACGGGCTTGCAGATAGCTTTGCGCAAAATCCCGGTCCAGGGTACGTACACGCAGGAt > 1:134044/1‑150 (MQ=255) ccAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGAt < 2:419596/150‑1 (MQ=255) ccAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGAt > 2:279392/1‑150 (MQ=255) ggAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTa < 1:309993/150‑1 (MQ=255) aaaTCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGATAAGTCTAGGCGGGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAAc > 1:428737/1‑150 (MQ=255) aaTCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGGTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACACAGGATGTAACg > 1:235699/1‑150 (MQ=255) tCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCAGGGCCAGGGTACGTACACGCAGGATGTAACGCt > 1:222649/1‑150 (MQ=255) cTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTg > 1:401119/1‑150 (MQ=255) ttGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTgg > 1:344847/1‑150 (MQ=255) ttGAGCACCAATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTgg > 2:30648/1‑150 (MQ=255) gCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCgag < 1:112155/150‑1 (MQ=255) cAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCgaga > 2:201128/1‑150 (MQ=255) ccTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATgg < 1:187237/150‑1 (MQ=255) cTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGgc > 1:132590/1‑150 (MQ=255) gCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCgcggc < 1:279392/150‑1 (MQ=255) ccAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGt > 2:419050/1‑150 (MQ=255) cAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTc > 2:153204/1‑150 (MQ=255) acacTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCca > 2:338579/1‑150 (MQ=255) acTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGt > 1:103019/1‑122 (MQ=255) acTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGt < 2:103019/122‑1 (MQ=255) cTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGACACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCcagca < 2:222649/150‑1 (MQ=255) cAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGt < 1:419050/150‑1 (MQ=255) gCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTc < 2:192222/150‑1 (MQ=255) ccATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCa < 2:134044/150‑1 (MQ=255) ttgcGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCgcggc < 1:25687/110‑1 (MQ=255) cATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCgcggc > 2:25687/1‑113 (MQ=255) cATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAg < 2:344847/150‑1 (MQ=255) aTCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGt < 2:320600/134‑1 (MQ=255) aTCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGt > 1:320600/1‑134 (MQ=255) tCGGGAAGCCCAGGCTTTCGCGGGCGTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACACAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGa < 2:235699/150‑1 (MQ=255) cccAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCa > 2:23858/1‑150 (MQ=255) cccAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACACAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCa > 1:115201/1‑150 (MQ=255) cAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATa > 1:190425/1‑150 (MQ=255) cAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACACAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATa < 2:115201/150‑1 (MQ=255) aGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAg < 1:153204/150‑1 (MQ=255) ttGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTcggcagcggcag > 1:33773/1‑150 (MQ=255) ttGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTcggcagcggcag > 2:491903/1‑150 (MQ=255) tGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCggcagcggcagc < 2:132590/150‑1 (MQ=255) aTAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAg > 2:352660/1‑150 (MQ=255) gcCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGaa < 1:366191/89‑1 (MQ=255) gcCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGc < 2:141915/141‑1 (MQ=255) gcCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGc > 1:141915/1‑141 (MQ=255) gcCACGTCCCGGGCAAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGaa > 2:366191/1‑89 (MQ=255) ccACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGCTTGATCATGc < 1:491903/150‑1 (MQ=255) cACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGCTTGATCAGGCg < 1:23858/150‑1 (MQ=255) gTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGCTTGATCAGGCGGtt < 1:338579/150‑1 (MQ=255) gggCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGCTTGATCAGGCGGTTGGCtt < 2:33773/150‑1 (MQ=255) ggCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGCTTGATCAGGCGGTTGGCTTc < 1:201128/150‑1 (MQ=255) gCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGACGTATAGGGTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGCTTGATCAGGCGGTTGGCTTCg < 1:30648/150‑1 (MQ=255) | CCAGGAAATCTTGAGCACTCATTGTGCAGCCTCCAGCTTAGCCAACACTTCGTCACGCAGTTCAGGGGTGGCCATCGGGAAGCCCAGGCGTGCGCGGGCTTGCAGATAGCTTTGCGCCACGTCCCGGGCCAGGGTACGTACACGCAGGATGTAACGCTGGCGCTCGGTTACCGAGATGGCGCGGCGGGCGTCCAGCAGGTTGAAGGTATGCGATGCCTTCAGGACCATTTCATAGGTCGGCAGCGGCAGCTCCAGCTTGATCAGGCGGTTGGCTTCG > NC_002947/71883‑72159 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |